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Pluripotent stem cellderived NK cells with high-affinity noncleavable …

Posted: July 3, 2022 at 2:13 am

Abstract

Antibody-dependent cellular cytotoxicity (ADCC) is a key effector mechanism of natural killer (NK) cells that is mediated by therapeutic monoclonal antibodies (mAbs). This process is facilitated by the Fc receptor CD16a on human NK cells. CD16a appears to be the only activating receptor on NK cells that is cleaved by the metalloprotease a disintegrin and metalloproteinase-17 upon stimulation. We previously demonstrated that a point mutation of CD16a prevents this activation-induced surface cleavage. This noncleavable CD16a variant is now further modified to include the high-affinity noncleavable variant of CD16a (hnCD16) and was engineered into human induced pluripotent stem cells (iPSCs) to create a renewable source for human induced pluripotent stem cellderived NK (hnCD16-iNK) cells. Compared with unmodified iNK cells and peripheral bloodderived NK (PB-NK) cells, hnCD16-iNK cells proved to be highly resistant to activation-induced cleavage of CD16a. We found that hnCD16-iNK cells were functionally mature and exhibited enhanced ADCC against multiple tumor targets. In vivo xenograft studies using a human B-cell lymphoma demonstrated that treatment with hnCD16-iNK cells and anti-CD20 mAb led to significantly improved regression of B-cell lymphoma compared with treatment utilizing anti-CD20 mAb with PB-NK cells or unmodified iNK cells. hnCD16-iNK cells, combined with anti-HER2 mAb, also mediated improved survival in an ovarian cancer xenograft model. Together, these findings show that hnCD16-iNK cells combined with mAbs are highly effective against hematologic malignancies and solid tumors that are typically resistant to NK cellmediated killing, demonstrating the feasibility of producing a standardized off-the-shelf engineered NK cell therapy with improved ADCC properties to treat malignancies that are otherwise refractory.

Cell-based anticancer immunotherapies have experienced great advances in the past few years.1 Although chimeric antigen receptor (CAR)expressing T cells have garnered the most attention, clinical trials using natural killer (NK) cells have demonstrated that they are safe and effective.2-5 In recent clinical trials, NK cells have been shown to possess potent antiacute myeloid leukemia effects without eliciting serious adverse effects, such as graft-versus-host disease, neurotoxicity, and cytokine release syndrome.4,6,7 However, the adoptive transfer of NK cells to patients with B-cell lymphoma, ovarian carcinoma, or renal cell carcinoma has demonstrated low efficacy and has lacked specific tumor-targeting receptors8-10.

NK cellbased clinical trials have used a variety of cell sources, including peripheral bloodderived NK (PB-NK) cells, umbilical cord bloodisolated NK (UCB-NK) cells, umbilical cord blood CD34+ cellderived NK cells, and the NK cell line NK-92.7,11-14 Although these trials have demonstrated clinical safety, each cell source is confined by limitations.11,12,15 The NK cell yields and subsets from PB-NK cells and UCB-NK cells are extremely donor dependent and are not derived from a single renewable source, making product standardization and multiple-dosing strategies difficult.16,17 Additionally, genetic modification of primary NK cells is challenging and highly variable, making it difficult to develop consistent and reproducible engineered NK cell therapies.18 Lastly, although NK-92 cells are from a single source, they lack many conventional NK cell markers and, as a transformed cell, must be mitotically inactivated before infusion to prevent uncontrolled proliferation.13 This eliminates the ability of NK-92 cell treatment to expand upon infusion, a critical factor for NK cell antitumor activity.2,4,7,19 In contrast, human induced pluripotent stem cell (iPSC)derived NK (iNK) cells can be produced in a homogenous and clinically scalable manner, are capable of being genetically edited at the iPSC stage, and have demonstrated in vivo proliferative capacity.20-23 Therefore, iNK cells are an important source of standardized off-the-shelf NK cell therapy to treat refractory malignancies.24

NK cellmediated antitumor activity is regulated through a repertoire of activating and inhibitory cell surface receptors, including natural cytotoxicity receptors, killer immunoglobulin receptors, and immunoglobulin G (IgG) Fc receptor FcRIIIa (CD16a).4,5,25 CD16a binds the Fc portion of IgG when attached to a target cell to mediate antibody-dependent cell-mediated cytotoxicity (ADCC), a key effector and tumor antigen-targeting mechanism of NK cells.26 The binding affinity of CD16a to IgG varies between its allelic variants. Specifically, CD16a with valine at position 158 (158V) has a higher affinity for IgG than does CD16a with phenylalanine at the same position.27,28 In addition to the clinical observation that NK cells enhance the efficacy of therapeutic monoclonal antibodies (mAbs),29 CD16a has been shown to play an important role in the clinical setting, because patients with high-affinity CD16a with 158V have had greater objective responses and progression-free survival when treated with cetuximab, trastuzumab, or rituximab.30-32 Notably, the CD16a molecule is cleaved from the surface of activated NK cells by a disintegrin and metalloproteinase-17 (ADAM17), which is constitutively expressed on the surface of NK cells,33-36 leading to NK cell dysfunction and reduced ADCC capacity.35 Our group previously identified the ADAM17 cleavage site of CD16 and created a high-affinity noncleavable version of CD16a (hnCD16) by mutating the cleavage site in the 158V variant.33

We hypothesized that engineering iNK cells with hnCD16 would overcome the challenges faced with NK cell therapies. Specifically, we demonstrate that iNK cells uniformly expressing hnCD16 (hnCD16-iNK cells) exhibit potent ADCC against hematological malignancies and solid tumors. Notably, a multidose regimen of hnCD16-iNK cells derived from an engineered clonal human iPSC line administered with anti-CD20 mAb treatment mediated potent activity and improved long-term survival in a mouse xenograft lymphoma model. Therefore, standardized off-the-shelf hnCD16-iNK cells with enhanced ADCC effector function, in combination with readily available anti-tumor mAbs, provide a novel clinical strategy to treat cancer.

The derivation of NK cells from human iPSCs has been described previously.20,37 iNK cells were expanded using irradiated K562IL214-1BBL cells (details can be found in supplemental Methods, available on the Blood Web site).

CD107a expression was assessed and interferon- (IFN-) staining was performed as previously described.23 NK cells were cocultured with tumor targets at a 1:1 effector-to-target ratio. Details about the staining procedure are available in supplemental Methods.

NOD/SCID/c/ (NSG) mice (The Jackson Laboratory; n = 5 per group) were used for in vivo experiments. Mice were sublethally irradiated (225 cGy) 1 day prior to tumor engraftment. Mice were given 1 105 to 2.5 105 Luc-expressing tumor cells IV or via intraperitoneal injection. For the intraperitoneal injection tumor models, NK cells (107 cells per mouse) were injected intraperitoneally 4 days after tumor transplant. One day prior to NK cell injection, mice were assayed for tumor burden using bioluminescent imaging (BLI) and then placed into equivalent BLI-expressing groups. For the IV models, NK cells (107 cells per mouse) were injected IV 1 day after tumor cell infusion. NK cells were supported by the injection of interleukin-2 (IL-2) and/or IL-15, as reported previously.22 Tumor burden was determined by BLI using a Xenogen IVIS Imaging system. Mice were euthanized when they lost the ability to ambulate. All mice were housed, treated, and handled in accordance with the guidelines set forth by the University of California, San Diego Institutional Animal Care and Use Committee and the National Institutes of Healths Guide for the Care and Use of Laboratory Animals.

All antibodies used are listed in supplemental Methods. Flow cytometry was performed on a BD FACSCalibur, a BD LSR II, or a NovoCyte 3000, and data were analyzed using FlowJo or NovoExpress software.

Data are presented as the mean standard error of the mean (SEM). In vitro data are from 3 independent experiments. Differences between groups were evaluated using 1-way analysis of variance. For the quantification of in vivo image, data are presented as the mean SEM, and differences between groups were analyzed using a 2-tailed Student t test. The survival curve was analyzed using the log-rank (Mantel-Cox) test. Statistical analyses were performed using GraphPad Prism. All tests were considered significant at P < .05.

To maintain high levels of stable CD16a expression on mature NK cells, we engineered human iPSCs with a non-ADAM17 cleavable version of the high-affinity CD16a 158V variant (supplemental Figure 1A-B).33 From the transduced hnCD16 pool, clonal iPSC lines were generated and screened to ensure a homogenous population of starting material (supplemental Figure 1C).38 The selected hnCD16-engineered iPSC clonal cell line stably expressed homogenous levels of hnCD16 (>99% CD16+; supplemental Figure 1D). Overexpression of hnCD16 had no significant effect on the morphology or growth rate of hnCD16-engineered iPSCs, which maintained homogenous expression of pluripotency master regulators NANOG and OCT4, as determined by flow cytometry (supplemental Figure 1E), as well as hiPSC surface markers (SSEA4, TRA-1-81, and CD30; supplemental Figure 1F). Moreover, integration site analysis showed that the hnCD16-iPSC clonal line that we selected has 3 copies of hnCD16 inserted. The hnCD16 transgene was inserted into intron regions or an intergenic region that would not lead to any changes in NK cell growth or activity (supplemental Table 1).

We then generated NK cells from hnCD16-engineered iPSCs using an in vitro differentiation method previously reported by our group (supplemental Figure 1B).20,39 Similar to PB-NK cells, unmodified iNK cells and hnCD16-iNK cells consist of a homogeneous population of CD56+ NK cells that also coexpress typical NK cell surface antigens: NKp44, NKp46, NKG2D, TRAIL, and Fas ligand (). They also expressed NK cell maturation markers (eg, CD94, CD2, NKG2C, and CD57) and homing receptors (eg, CXCR4 and CCR6) (). Expression of CD62L, another receptor that can be cleaved by ADAM17,40,41 was very low in iNK cells compared with PB-NK cells (supplemental Figure 2A). Additional characterization studies demonstrate that iNK cells have a longer telomere length than do PB-NK cells (supplemental Figure 1F).

hnCD16-iPSCderived NK cells are functionally mature and do not downregulate CD16 expression upon activation. (A) Unmodified iNK cells, hnCD16-iNK cells, and adult PB-NK cells were stained and analyzed by flow cytometry for CD56 and CD16 and the indicated NK cell surface receptors. In each panel, red line: isotype control; blue line: stained sample. Data were repeated independently in 3 separate experiments. (B) hnCD16-iNK cells, unmodified iNK cells, or PB-NK cells were stimulated as indicated for 4 hours, and CD16 expression was determined by flow cytometry (n = 4-6 per group). (C) Representative flow cytometric analysis of CD16 and TNF- expression on unmodified iNK cells, hnCD16-iNK cells, and PB-NK cells that were left unstimulated or stimulated with K562 cells or PMA/ionomycin. (D) Representative flow cytometric analysis of intracellular TNF- and IFN- production after a 4-hour incubation with culture media only (unstimulated), with P815 cells, or with P815 cells + anti-CD16 antibody. Data in panels C-D were repeated in 3 separate experiments.

hnCD16-iNK cells were expanded using artificial antigen presenting cells (aAPCs), as previously reported.22,42 Under these culture and expansion conditions, nearly all hnCD16-iNK cells expressed CD16 (99% CD16+; ), whereas the endogenous expression of CD16 on unmodified iNK cells and PB-NK cells under the same culture conditions is typically between 20% and 60% (). These results are consistent with previous studies demonstrating that endogenous CD16 is cleaved from the surface of NK cells by ADAM17 upon activation by stimuli, such as cytokines and target cells.33,36 To assess the stability of CD16 expression by hnCD16-iNK cells, we activated unmodified iNK cells, hnCD16-iNK cells, and PB-NK cells with different stimuli, including PMA/ionomycin, K562 cells, the CD20+ Burkitt lymphoma cell line Raji, and Raji cells in the presence of the anti-CD20 mAb rituximab (). For example, after stimulation with K562 target cells or PMA/ionomycin, PB-NK cells and unmodified iNK cells lost the majority of their CD16 expression, whereas the majority of hnCD16-iNK cells maintained high levels of CD16 expression (). It is also important to note that unmodified iNK cells are homozygous for low-affinity CD16 (158F), whereas PB-NK cells are heterozygous (supplemental Figure 1G), indicating that low-affinity and high-affinity CD16 can be downregulated on activated NK cells. Importantly, stable CD16 surface expression on hnCD16-iNK cells led to enhanced cytokine production when CD16 was activated directly (). In support of this, the production of tumor necrosis factor- (TNF-) and IFN- in response to CD16a stimulation was directly correlated with the level of surface CD16 expression ().

Because CD16 is a key activating receptor on NK cells that mediates ADCC, we examined the ability of hnCD16-iNK cells to mediate ADCC against multiple cancer cell lines, including Raji cells, A549 (lung adenocarcinoma) cells, SKOV-3 (ovarian adenocarcinoma) cells, and Cal27 (squamous cell carcinoma) cells. The antibodies that recognize antigens on these tumor cell lines (CD20 on Raji; EGFR on A549, SKOV-3, and Cal27; HER2 on SKOV-3) are all routinely used clinically with proven efficacy.43-45

We first used degranulation (indicated by the cell surface expression of CD107a) and IFN-/TNF- expression as parameters for NK cell activity to evaluate antibody-dependent effector function against different cancer cell populations.21,23 When Raji, SKOV-3, and Cal27 cells were cocultured with unmodified iNK cells or with hnCD16-iNK cells alone, minimal expression of CD107a, IFN- (), and TNF- (supplemental Figure 2B) was detected. However, when target cells were pretreated with their respective antibodies (anti-CD20: rituximab; anti-HER2: trastuzumab; and anti-EGFR: cetuximab), CD107a+ hnCD16-iNK cells were increased 3.9-, 8-, and 4.5-fold for Raji cells + rituximab, SKOV-3 cells + trastuzumab, and Cal27 cells + cetuximab, respectively (), and IFN+ hnCD16-iNK cells were increased 5.1-, 12-, and 6.5-fold () for Raji cells + rituximab, SKOV-3 cells + trastuzumab, and Cal27 cells + cetuximab, respectively. Production of IFN- correlates closely with production of TNF- in NK cells (supplemental Figure 2). In contrast, stimulation of unmodified iNK cells with target cells and antibodies did not mediate increased CD107a, IFN-, () or TNF- (supplemental Figure 2) expression, suggesting that hnCD16 improved the antibody-dependent cytokine response against these tumor cells. In addition, we systemically evaluated cytokine production by comparing TNF- and IFN- production and CD107a surface expression of unmodified iNK cells, hnCD16-iNK cells, UCB-NK cells, and PB-NK cells upon stimulation with P815 cells (mouse lymphoblast-like mastocytoma cell line),46 P815 cells + anti-CD16 mAb, Raji cells, and Raji cells + anti-CD20 mAb. Similarly, hnCD16-iNK cells showed the greatest TNF- and IFN- production and CD107a surface expression with P815 + anti-CD16 mAb or Raji + anti-CD20 mAb stimulation, suggesting the strongest antibody-mediated response against these tumor targets ().

hnCD16-iNK cells demonstrate improved in vitro ADCC against multiple tumor types. (A) hnCD16-iNK cells and unmodified iNK cells produce CD107 and IFN- in response to Raji cells with or without anti-CD20 antibody, in response to SKOV-3 cells with or without anti-HER2, and in response to Cal27 cells with or without anti-EGFR. hnCD16-iNK cells or unmodified iNK cells were left unstimulated or were stimulated with a 1:1 ratio of target cells with or without antibody and stained for CD107a and IFN- 4 hours later. (B) Quantification of CD107a (left panel) and IFN- (right panel) expression by cells in panel A. An increase in CD107a+ or IFN+ positive cells in the antibody group was normalized to the without-antibody group (fold increase: antibody/without antibody). Studies were repeated independently 3 times, and data are mean standard deviation. (C) Quantification of flow cytometric analysis of TNF- and IFN- production and CD107a surface expression after a 4-hour incubation with culture media only (unstimulated) or with the indicated stimuli. Heat maps quantify the frequency of NK cells that are positive for IFN-, TNF-, or CD107a and are scaled from 0% (black) to 30% (yellow), with background expression subtracted such that unstimulated = 0. (D) ADCC against Raji cells was analyzed using a caspase-3/7 green flow cytometry assay. Raji cells were incubated with NK cells, with or without anti-CD20 antibody, for 4 hours. (E) ADCC against Raji cells was analyzed over a 24-hour period using an IncuCyte real-time imaging system. Anti-CD20 was titrated from 0.001 g/mL to 20 g/mL. (F-G) Long-term (66-hour) ADCC assays using the IncuCyte real-time imaging system. ADCC against the lung cancer cell line A549 with and without anti-EGFR mAb (F) and against the ovarian cancer cell line SKOV-3 with and without anti-HER2 mAb (G). Data in panels F-G are presented as the normalized frequency of target cells remaining, where target cells without NK effectors = 100%. Data in panels D-G were repeated independently in 3 separate experiments. ***P < .001, 2-tailed Student t test.

We then assessed these different NK cell populations for ADCC. Similar to the results for NK cell degranulation and IFN- expression, unmodified iNK cells demonstrated relatively limited killing of Raji cells, even with the addition of an anti-CD20 mAb (). In contrast, the addition of an anti-CD20 mAb to hnCD16-iNK cells cocultured with Raji cells led to a marked increase in cell killing (). A prolonged time course analysis using various doses of anti-CD20 mAb further demonstrated the potent ADCC activity of hnCD16-iNK cells, even at antibody concentrations as low as 0.1 g/mL, which may improve the efficacy of mAb treatment41 (). Studies comparing hnCD16-iNK cells with PB-NK cells using this longer (>60 hours) cytotoxicity assay against SKOV-3 cells (with or without trastuzumab; ) and A549 cells (with or without cetuximab; ) also demonstrated that hnCD16-iNK cells mediated improved ADCC compared with PB-NK cells. To further investigate the contribution of the noncleavable CD16 variant to the improved ADCC, we compared hnCD16-iNK cells and iNK cells engineered with natural (cleavable) high-affinity CD16 (WTCD16-iNK cells).33 hnCD16-iNK cells and WTCD16-iNK cells exhibit similar expression levels of CD16 (supplemental Figure 3A-B). In line with our previous findings (), CD16 expression in WTCD16-iNK cells was downregulated when cells were activated with PMA/ionomycin, Raji cells + anti-CD20 mAb rituximab, or Cal-27 cells + anti-EGFR mAb cetuximab for 4 hours (supplemental Figure 3C). In contrast, hnCD16-iNK cells maintained uniformly high levels of CD16 expression (supplemental Figure 3C). Notably, hnCD16-iNK cells mediated ADCC better than did WTCD16-iNK cells (supplemental Figure 3D-E). These results demonstrate that noncleavable CD16 contributes to the improved ADCC in hnCD16-iNK cells.

Next, we investigated downstream signaling mediated by CD16 activation. Upon cross-linking by anti-CD16 antibody, all 3 cell populations mediate efficient downstream signaling activation, as shown by phospho-flow staining of CD3, ZAP70, and SLP76, which are downstream targets of CD16 activation47 (supplemental Figure 4A). This was supported by immunoblot analysis that also demonstrates ERK phosphorylation (supplemental Figure 4B). Furthermore, we studied the detachment of NK cells after killing target cells using an IncuCyte real-time imaging system. Again, hnCD16-iNK cells show significantly better killing against Cal27 cells with the addition of cetuximab (supplemental Figure 5A-D). Notably, the number of target cells killed per single hnCD16-iNK cell was significantly higher than that seen with unmodified iNK cells and PB-NK cells (supplemental Figure 5D). The percentage of NK cells detached from targets and the detachment time after killing targets are also similar among hnCD16-iNK cells, unmodified iNK cells, and PB-NK cells (supplemental Figure 5E-F), demonstrating that hnCD16 does not inhibit the detachment of NK cells from targets (see also supplemental Videos 1-3).

To evaluate the in vivo ADCC activity of the hnCD16-iNK cells, we used a Raji-Luc xenograft mouse model () to compare 8 treatment groups: tumor alone (untreated), anti-CD20 mAb alone, and PB-NK cells, unmodified iNK cells, or hnCD16-iNK cells alone or in combination with anti-CD20 mAb (). As previously seen with NK cells in this in vivo xenograft model,48 treatment with PB-NK cells, unmodified iNK cells, or hnCD16-iNK cells alone did not inhibit tumor growth, and mice in these 3 groups show tumor burden similar to that seen in the untreated tumor group at all time points (). In comparison with anti-CD20 mAb treatment alone, combination treatment with hnCD16-iNK and anti-CD20 mAb was the only one to result in a significant decrease in tumor burden (at day 10 posttreatment, **P < .001) (). Specifically, a single dose of anti-CD20 mAb improved median survival from 27 to 38 days, whereas the combination of PB-NK cells or unmodified iNK cells with anti-CD20 mAb further inhibited tumor progression and resulted in significantly better median survival (43 and 44 days, respectively; ). Combination treatment with hnCD16-iNK cells and anti-CD20 mAb led to an additional increase in median survival to 52 days (; anti-CD20 vs hnCD16-iNK cells + anti-CD20; P = .0027). However, survival in the hnCD16-iNK cells + anti-CD20 mAb group was not statistically better than in the PB-NK cells + anti-CD20 mAb group or the unmodified iNK cells + anti-CD20 mAb group (). Therefore, in this single-dose model, any of the 3 NK cell populations combined with anti-CD20 treatment mediated effective antitumor activity in vivo ().

A single dose of hnCD16-iNK cells effectively mediates in vivo ADCC against human B-cell lymphoma. (A) Schema of single-dose NK infusion in vivo study. NSG mice were inoculated intraperitoneally with 2 105 Luc-expressing Raji cells, and tumor engraftment was assessed by IVIS imaging 3 days later for a baseline pretreatment reading. On day 4 after transplant, mice were left untreated or were treated with 1 107 PB-NK cells, unmodified iNK cells, or hnCD16-iNK cells, alone or in combination with 300 g of anti-CD20 antibody. Mice were treated with IL-15 for the first week and with IL-2 for 3 weeks, and IVIS imaging was performed to track tumor progression. (B) Tumor burden was determined by BLI. (C) Quantification of IVIS imaging time course. Data are mean SEM for the mice in panel B. Data were not significant for anti-CD20 alone vs unmodified iNK cells + anti-CD20 or for PB-NK cells + anti-CD20 at all time points. (D) Kaplan-Meier curve demonstrating survival of the experimental groups. The median survival for the untreated group and the groups treated with anti-CD20, PB-NK cells + anti-CD20, unmodified iNK cells + anti-CD20, and hnCD16-iNK cells + anti-CD20 was 27, 38, 43, 44, and 52 days, respectively. Anti-CD20 vs PB-NK+anti-CD20, P = .0047; anti-CD20 vs unmodified-iNK+anti-CD20, P = .0067; anti-CD20 vs hnCD16-iNK+anti-CD20, P = .0027; PB-NK+anti-CD20 vs hnCD16-iNK+anti-CD20, P = .1098; unmodified-iNK+anti-CD20 vs hnCD16-iNK+anti-CD20, P = .3127; 2-tailed log-rank test. *P < .05, **P < .01, 2-tailed Student t test, anti-CD20 alone vs hnCD16-iNK cells + anti-CD20.

In the single-dose study, we identified a decrease in tumor burden at day 10 (); however, relapse was observed in most of the treated mice, which may be due to human NK cells having a limited life span after adoptive transfer.2,22,23 We next examined whether multiple doses of NK cells + anti-CD20 mAb would further augment in vivo ADCC. We performed a 1-month dosing study consisting of 4 weekly doses of NK cells, with or without anti-CD20 mAb (). Because unmodified iNK cells and PB-NK cells, in combination with anti-CD20, show similar tumor suppression in the single-dose study, in this study we focused our comparison on hnCD16-iNK cells and PB-NK cells. Similar to the single-dose study, all of the mice in the untreated groups died between day 23 and day 26 (median survival, 25 days; ). Again, 4 weekly doses of PB-NK cells or hnCD16-iNK cells alone had no effect on tumor progression (). As expected, 4 weekly doses of anti-CD20 mAb alone induced tumor regression () and prolonged the median survival to 47 days (). Notably, median survival was longer with multiple NK cell doses compared with the single-dose study (hnCD16-iNK cells + anti-CD20 mAb), demonstrating significant improvement in antitumor activity, with a mean survival of 76 days (; anti-CD20 vs hnCD16-iNK cells + anti-CD20; P = .0065).

Multiple doses of hnCD16-iNK cells effectively mediate improved ADCC in vivo against B-cell lymphoma. (A) Schema of multiple NK cell dosing study. NSG mice were inoculated intraperitoneally with 2 105 Luc-expressing Raji cells, and tumor engraftment was assessed by IVIS imaging 3 days later for a baseline pretreatment reading. On day 4 after transplant, mice were left untreated or were treated with 1 107 PB-NK cells or hnCD16-iNK cells, alone or in combination with 300 g of rituximab weekly for 4 weeks. NK cells were supported by injection of IL-15 for the first week and by injection of IL-2 for 3 weeks. IVIS imaging was done weekly to monitor tumor progression. (B) Tumor burden was determined by BLI over the first 28 days. (C) Time course of IVIS imaging. Data are mean SEM for the mice in panel B. Anti-CD20 vs PB-NK+anti-CD20 not significant for all data points, 2-tailed Student t test. (D) Kaplan-Meier curve representing the percent survival of the experimental groups. The median survival for the untreated group and the groups treated with Anti-CD20, PB-NK+anti-CD20, and hnCD16-iNK+anti-CD20 are 25, 47, 61, and 76 days, respectively. Anti-CD20 vs PB-NK+anti-CD20, P = .0185; anti-CD20 vs hnCD16-iNK+anti-CD20, P = .0065; PB-NK+anti-CD20 vs hnCD16-iNK+anti-CD20, P = .0485; 2-tailed log-rank test. *P < .05, **P < .01, anti-CD20 vs hnCD16-iNK+anti-CD20, 2-tailed Student t test.

Interestingly, of the 3 mice in the PB-NK cells + anti-CD20 mAb group that did not exhibit detectable tumor at day 14, all exhibited tumor relapse by day 28 (). However, only 1 of the 4 mice that had undetectable tumor at day 14 in the hnCD16-iNK cells + anti-CD20 mAb group experienced tumor relapse at day 28 (), and 2 mice maintained complete remission (>200 days), demonstrating a more durable antitumor response (). Furthermore, the survival rate of mice receiving multiple dosing of hnCD16-iNK cells + anti-CD20 mAb treatment was significantly better than for PB-NK cells + anti-CD20 mAb treatment (P = .0485; ). These results support the strategy of multidosing of hnCD16-iNK cells to maximize ADCC in vivo to enable long-term survival and possible complete tumor elimination.

To evaluate the in vivo ADCC activity of hnCD16-iNK cells in a more clinically relevant model, we used an in vivo systemic tumor model in which Raji-Luc tumor cells and NK cells were dosed IV (). In this model, tumor distribution is disseminated, and disease progression is more aggressive than when tumor cells are delivered intraperitoneally. The median survival of mice in untreated groups was 17 days (). Consistent with previous studies, treatment with PB-NK cells, unmodified iNK cells, or hnCD16-iNK cells alone did not inhibit tumor growth (). A single dose of anti-CD20 mAb alone decreased tumor burden () and improved the median survival from 17 to 35 days (; P = .021). Combination treatment using PB-NK cells or unmodified iNK cells + anti-CD20 mAb did not improve tumor control in comparison with anti-CD20 mAb treatment alone (). As with the intraperitoneal injection model, combination treatment with hnCD16-iNK cells + anti-CD20 mAb mediated improved antitumor activity with significantly better survival than anti-CD20 mAb alone (P = .0269), PB-NK cells + anti-CD20 mAb (P = .0342), or unmodified iNK cells + anti-CD20 mAb (P = .0350; ). Notably, 3 mice in the hnCD16-iNK cells + anti-CD20 mAb group maintained complete remission at 100 days posttumor transplant, whereas no mice in other groups survived beyond 60 days (). These results further confirmed that hnCD16-iNK cells can effectively mediate ADCC and provide a more durable antitumor response against human lymphoma.

hnCD16-iNK cells effectively mediate ADCC in a human lymphoma systemic tumor model. (A) Flow scheme of IV NK cell infusion in vivo study. NSG mice were inoculated IV with 2 105 Luc-expressing Raji cells. On day 1 after transplant, mice were left untreated or were treated with 1 107 PB-NK cells, unmodified iNK cells, or hnCD16-iNK cells, alone or in combination with 300 g of anti-CD20 antibody. NK cells were supported by injection of IL-15 for the first week and by injection of IL-2 for 3 weeks; IVIS imaging was performed weekly to track tumor progression. (B) Tumor burden was determined by BLI over the first 35 days. (C) IVIS imaging time course. Data are mean SEM for the mice in panel B. (D) Kaplan-Meier curve representing the percent survival of the experimental groups. The median survival was not reached in the hnCD16-iNK + anti-CD20 group. Anti-CD20 vs untreated, P = .0021; anti-CD20 vs hnCD16-iNK+anti-CD20, P = .0269; hnCD16-iNK+anti-CD20 vs PB-NK+anti-CD20, P = .0342; hnCD16-iNK+anti-CD20 vs umnodified-iNK+anti-CD20, P = .0350; 2-tailed log-rank test. *P < .05, **P < .01, ***P < .001, hnCD16-iNK+anti-CD20 vs umnodified-iNK+anti-CD20, 2-tailed Student t test.

We then investigated the in vivo persistence and homing of NK cells in a separate group of tumor-bearing mice by examining blood, bone marrow, spleen, kidney, liver, and heart for the presence of NK cells over 21 days postinjection. On day 7, human NK cells were detected in all of the organs examined (supplemental Figure 6A-B), although some of the cells seen in organs may be from blood perfusing those organs, because this cannot be distinguished when organs are processed for analysis. The infused NK cells reached a peak at day 7 and persisted for up to 21 days (supplemental Figure 6C). PD-1 expression was not detected on iNK cells before or after adoptive transfer (supplemental Figure 6D). Unmodified iNK cells, hnCD16-iNK cells, and PB-NK cells show similar persistence, and homing was confirmed by immunohistochemistry staining in organs (supplemental Figure 6E), indicating that the improved antitumor effect mediated by hnCD16-iNK cells was due to increased ADCC rather than differences in persistence or homing.

To test whether hnCD16-iNK cells can also elicit antitumor effects against solid tumors in vivo, we used a mouse xenograft model and SKOV-3 ovarian carcinoma cells (). Combination treatment with hnCD16-iNK cells + anti-HER2 mAb led to significantly lower tumor burden at all time points between day 18 and day 60 (). Moreover, hnCD16-iNK cells + anti-HER2 mAb significantly improved survival (P = .0040; ). These results demonstrate that hnCD16-iNK cells can also mediate an antitumor response in an in vivo ovarian cancer model when combined with anti-HER2.

hnCD16-iNK cells mediate improved ADCC in vivo against ovarian cancer. NSG mice were inoculated intraperitoneally with 1 105 Luc-expressing SKOV-3 cells, and tumor engraftment was assessed by IVIS imaging 4 days later. On day 5 after tumor transplant, mice were left untreated or were treated with 100 g of anti-HER2 alone or in combination with 5 106 hnCD16 iNK cells. NK cells were supported by twice weekly injections of IL-2, and IVIS imaging was done weekly to track tumor load. (A) IVIS imaging. (B) Quantification of geometric mean standard deviation for the mice in panel A. (C) Kaplan-Meier curve representing the percent survival of the experimental groups. Untreated vs anti-HER2, P = .0140; anti-HER2 vs anti-HER2 + hnCD16 iNK+, P = .004; 2-tailed log-rank test. (D) Mice injected with Luc-expressing SKOV-3 cells were treated with 1 107 (1e7) or 2 107 (2e7) cryopreserved hnCD16-iNK cells or with 2 107 fresh hnCD16-iNK cells + anti-HER2 antibody. (D) IVIS imaging. (E) Quantification of the geometric mean standard deviation for the mice in panel D.

A key challenge in developing off-the-shelf adoptive cell therapies is getting cells from the manufacturing site to the patient without compromising safety or efficacy.49 Cryopreservation provides the best opportunity to deliver multiple doses, which can augment the antitumor effect while maintaining the high levels of killing seen in previous studies,50 provided that the cell viability and function are not negatively impacted upon thawing. To test the anticancer activity of hnCD16-iNK cells after cryopreservation, we compared cryopreserved cells and fresh cells in the SKOV-3 cell ovarian tumor xenograft model (). Notably, one-time dosing of cryopreserved hnCD16-iNK cells demonstrated similar antitumor activity as fresh hnCD16-iNK cells ().

The ability to improve targeting and specificity are key requirements to better enable NK cellmediated killing of solid tumors and lymphoid malignancies that are typically more resistant to this therapeutic modality. Here, we demonstrate the ability to use human pluripotent stem cells as a platform to produce engineered NK cells that can be effectively combined with therapeutic mAbs to successfully target and kill typically NK cellresistant tumors. Specifically, creation and use of a novel CD16 molecule that contains the 158V high-affinity variant, combined with an S197P mutation that confers resistance to ADAM17-mediated cleavage, allows us to produce NK cells with improved ADCC activity in vitro and in vivo. In this model, CD16 engagement and signaling provide an important strategy to make NK cells antigen specific. These engineered iPSC-derived NK cells can now be produced at a clinical scale,20,24,51 as well as cryopreserved (), to enable upcoming clinical trials of hnCD16-iNK cells.

NK cellbased adoptive immunotherapy provides a promising therapeutic option for allogeneic cancer therapy, with many clinical trials underway for a variety of hematological malignancies and solid tumors.3-5 Most of these clinical trials use allogeneic PB-NK cells, and significant remissions have been observed when they are used to treat acute myeloid leukemia.2,19 However, as noted, the efficacy of PB-NK cells in the treatment of solid tumors, such as ovarian carcinoma and lung cancer, has been limited,10,15 likely as a result of the poor infiltration, inefficient homing, lack of specificity, and decreased persistence of NK cells in these patients.52 The solid tumor microenvironment can also act to decrease immune cell functions, including the elicitation of CD16 shedding.53 Human pluripotent stem cell-derived NK cells provide a novel option for adoptive immune cell therapy that may avoid some of the limitations of PB-NK cells and UCB-NK cells.20,24 Specifically, iPSCs can be routinely genetically modified on a clonal level to produce a homogeneous population of uniform engineered NK cells, rather than the heterogeneous NK cells that are typically obtained from peripheral blood or umbilical cord blood.21 Additionally, iNK cells can be expanded into a clinically scalable cell population that is suitable to treat hundreds or thousands of patients simultaneously. Indeed, our studies demonstrate that repeat dosing, combined with a targeting mAb, leads to long-term elimination of otherwise refractory tumor cells in these xenograft models ( and ).

Unlike autologous CAR-T cells that persist and remain functional for years posttransplantation,54 allogeneic NK cells normally survive in the host for only a few weeks in the adoptive transfer setting.2,7,10,19 However, considering the toxicities seen with CAR T-cell therapies,55 this property of allogeneic NK cells may be advantageous to enable more precise dosing strategies without significant concern for limiting toxicities. The use of PB-NK cells and UCB-NK cells does not typically allow for repeat dosing, because all of the cells collected or produced are used for the initial treatment, often after a dose of lymphodepleting chemotherapy. Indeed, clinical trials using genetically unmodified iPSC-derived NK cells have been initiated with repeat cell dosing on a weekly basis, for a total of 3 doses (clinicaltrials.gov {"type":"clinical-trial","attrs":{"text":"NCT03841110","term_id":"NCT03841110"}}NCT03841110). Other treatment schedules, such as monthly dosing, possibly combined with chemotherapy to treat solid tumors, can also be envisioned. Because previous trials of allogeneic NK cellbased therapies utilizing PB-NK cells, UCB-NK cells, or NK92 cells did not show complications, such as cytokine release syndrome, neurotoxicity, or graft-versus-host disease, that are seen with CAR T cells, these trials will be essential to demonstrate the safety and suitability of this multidosing strategy.

A recent study demonstrated that ADAM17-mediated CD16a shedding plays a role in the disassembly of the NK cell immune synapse during ADCC and regulates NK cell motility and detachment from target cells, potentially leading to improved NK cellmediated serial killing of tumor targets.56 However, we did not observe the inhibition of detachment from targets by hnCD16 in hnCD16-iNK cells (supplemental Figure 5). Furthermore, a direct comparison in long-term assays showed superior killing with hnCD16 compared with wild-type CD16. The discrepancy might be caused by different NK cells used in these studies. Srpan et al56 used NK-92 cells, which do not express endogenous CD16 and cannot mediate ADCC. Moreover, those studies did not test the effects of blocking CD16a shedding on NK cell effector functions in vivo and, in particular, in the tumor microenvironment. Notably, NK cells from patients with solid tumors have been shown to have lower CD16 expression and function compared with healthy controls.57 For these studies, we used multiple in vivo tumor models that all demonstrate the benefits of stable high-level noncleavable CD16a expression by NK cells.

In conclusion, this platform therapy provides high impact for immediate translation because it can be combined with essentially any readily available anti-tumor antibody (eg, rituximab, trastuzumab, or cetuximab). This offers several advantages over CAR T-cell therapy and avoids the complexities of developing individualized products with single specificity. Our data demonstrate the advantages of multidosing strategies and the ability to use cryopreserved iNK cell products to provide a new off-the-shelf therapeutic strategy for improved cancer control when used in combination with anti-cancer mAbs that mediate ADCC.

Contribution: H.Z. and R.B. designed and implemented studies, acquired and analyzed data, and wrote the manuscript; R.H.B. acquired and analyzed data and wrote the manuscript; S.G., P.R., G.B.B., and P.-F.T. acquired data; T.T.L. and R.A. designed and implemented studies and acquired and analyzed data; J.W. designed studies, generated the noncleavable human CD16 construct, and reviewed and revised the manuscript; J.S.M. and B.W. designed studies and reviewed and revised the manuscript; and B.V. and D.S.K. designed studies, analyzed data, and reviewed and revised the manuscript.

Conflict-of-interest disclosure: R.B., S.G., P.R., T.T.L., R.A., G.B.B., P.-F.T., and B.V. are employees of Fate Therapeutics with stock holdings and options. J.S.M. consults for and hold stock options in Fate Therapeutics, a company which may commercially benefit from the results of this research project. These interests have been reviewed and managed by the University of Minnesota in accordance with its conflict of interest policy. B.W. collaborates with Fate Therapuetics with a sponsored research agreement. D.S.K. is a consultant for Fate Therapeutics, has equity and receives income. The terms of this arrangement have been reviewed and approved by the University of California, San Diego in accordance with its conflict of interest policies.The remaining authors declare no competing financial interests.

Correspondence: Dan S. Kaufman, University of California, San Diego, 9500 Gilman Dr, MC 0695, La Jolla, CA 92093; e-mail: ude.dscu@namfuaksd.

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Plants aren’t good at photosynthesis. We can do it better – Big Think

Posted: July 3, 2022 at 2:12 am

Can we improve photosynthesis?

The examples described in this chapter show at least some of the things we need to do as we try simultaneously to feed our population and keep our planet habitable. As science advances, new possibilities become available and we periodically get excited about futuristic ways of limiting the damage of climate change. Successful demonstrations have shown that giant chemical air scrubbers might help to clean carbon dioxide from the air. Inventors promote the idea of growing new foods in bioreactors. Since we humans are tinkerers, it is perhaps inevitable that we will even try to improve photosynthesis itself.

Why would we meddle with photosynthesis? When compared to the best photovoltaic cells, photosynthesis is simply inefficient. The average land plant converts 0.1 to 1 percent of the sunlight striking it into useful chemical energy. Crop plants, if well managed, achieve an overall rate of 1 to 2 percent of effective energy conversion. Even at peak performance, our own microalgae in our sun-filled desert ponds only operate at 6 percent efficiency. That is rather poor performance when compared to the latest six-junction photovoltaic cells with light concentrators that are nearing 50 percent of light to useful electric energy conversion, developed at the U.S. National Renewable Energy Laboratory (NREL). Clearly, theres a lot of potential for improving photosynthesis.

I am one of the scientists who have tried. Back in the mid-1980s at the Massachusetts Institute of Technology, I helped create the first site-directed mutants of something called Photosystem II. After the exhausted excitement of working several-hundred hour weeks and sleeping in the lab, we discovered that it is difficult to improve on four billion years of evolution. The idea, however, was a good one. We were trying to understand how the photosynthetic machinery converts light into chemical energy.

Similarly, scientists have tried to tackle the problem of photorespiration. As discussed in Chapter 2, this is the paradox in which photosynthesizing organisms struggle to deal with the oxygen they produce, which reduces their ability to fix carbon by around 25 percent. There are multiple genetic engineering initiatives to reduce this photorespiration waste and increase the overall productivity of agricultural crops. Some plants, such as corn, have ways of storing carbon produced during the night so that they can enrich the photosynthetic conversion of carbon dioxide into complex chemicals during the day. There are projects currently underway that are seeking to introduce these carbon-concentrating mechanisms into other commercially significant crops. Scientists at the US Agricultural Research Service and the University of Illinois have, for instance, successfully increased photosynthetic efficiency in tobacco leaves by 20 percent. Wild mustard, pumpkin, and green algal and bacterial genes were recombined and promoted, to optimize the photosynthetic metabolism. Now the team is seeking to import this upgraded photosynthetic system into crop plants, such as wheat, rice, or soy. A 20 percent increase in their productivity would mean that we could feed significantly more people without using more land.

Others have attempted to create artificial leaves or artificial photosynthesis. These are important efforts to isolate, focus, and improve the advantages of photosynthesis in more efficient devices. Some create devices that perform the same function of capturing CO2 and turning it into useful chemicals such as syngas (synthetic gas: a fuel-gas mixture), while others are using photovoltaic energydriven membranes to capture CO2 to concentrate it with electrically charged membranes. In recent years, a major step toward artificial, but still biological, photosynthesis has been achieved by isolating chloroplast components in microscopic assemblages and separating them from the rest of the cell to boost their efficiency. The Franco-German team behind this project envisions that their enhanced photosynthetic machinery might be used to synthesize, for example, complex pharmaceutical molecules with the power of light.

All these inventive approaches have advantages and limitations. Often the net environmental impact is uncertain or very costly. In some cases, these improvement efforts simply transfer the efficiency or cost problem elsewhere. Most of these new devices lack long-term sustainability; they also take a lot of time and large amounts of money. The latest photovoltaic cells took more than fifty years to reach their current peak efficiencies, while the average installed base of photovoltaic cells linger between 15 and 20 percent efficiency.

Yet we need to try every advance, assess every potential solution, use every method to engage people and keep them engaged. Growing our world again will require hyperbolic entrepreneurism, new technology, and traditional methods. As we have seen, science is helping us in all sorts of waysupgrading pasturelands through managed grazing, inventing low-energy methods for making ammonia, providing new methods of recycling organic materials. There are nearly 63,000 power plants, hundreds of millions of hearths, and billions of cars, all burning fossil fuels. It requires as many ideas, methods, and approaches to balance their legacy.

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Of course, we need to improve agriculture and photosynthesis to use the agricultural land we have more effectively to grow food for all of us. We must continue to innovate, experiment, and push the limits of what is possible in terms of carbon removal and to increase the efficiency of photosynthesis itself, even if this is difficult. But that misses the opportunity to use photosynthesis in its current state, as it is today. Photosynthesizers grow in every environment: under the ice in Antarctica; stuck to the side of granite buildings; in forests, fields, oceans, and modern urban greenhouses. Even if less efficient, plant life covers a much larger surface area than all other carbon-capturing technologies combined, including both natural processes and artificial onesthe latter taking years to design, build, and commission. Plants have installed themselves already; they capture carbon while repairing, seeding, and multiplying themselves, feeding all ecosystems, and flexibly responding to environmental change, seasonality, and weather. Nobody must come and clear leaves of dust in the same way we need to clear photovoltaic cells to keep them operating. Most importantly, photosynthetic organisms are free to use today, and we have known, for thousands of years, how to propagate them. All societies know how to grow plants in their local environment, instead of waiting for a future technological breakthrough in efficiency.

Instead of schemes to shade the sun, fill the atmosphere with aerosols, or blast us to other planets, we have the planet-transforming potential of plants working for us today. I am an inventor and I am excited by technology, and I also value prosaic projects that enrich us biologically and economicallylike making a bit more dirt and planting a lot more trees. We can transform our planet for the better, with self-sufficientif not the most efficient photosynthetic technology right now.

This article is an adapted excerpt from How Light Makes Life: The Hidden Wonders and World-Saving Powers of Photosynthesis 2021 by Raffael Jovine. Reprinted with permission of The Experiment. Available wherever books are sold. theexperimentpublishing.com

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CRISPR and Cas Genes Market: The DNA-free Cas Segment Boost Growth in the Global Market – BioSpace

Posted: July 3, 2022 at 2:12 am

Wilmington, Delaware, United States, Transparency Market Research Inc.: CRISPR cas systems are commonly used in microbial engineering that includes immunization of cultures, bacterial strain typing, and self-targeted cell killing. Further, CRISPR and cas genes market system is also applied to control metabolic pathways for an improved biochemical synthesis. This technology is also used for the improvement of crop production. These factors further drive growth in the CRISPR and cas genes market.

CRISPR and cas genes system has been a revolutionary initiative in the biomedical research field. The application of this technology in somatic cell genome editing events has targeted to its application. The technologies are commonly used for the treatment of different genetic disorders. But, the ethical issues while using the system from the CRISPR and cas genes market are somewhere curtailing the growth in the industry. Furthermore, the market is also witnessing a lack of proficient professionals, which restrains its growth opportunities.

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The market forecast on CRISPR and cas genes market was estimated US$ 1,451.6 Mn. Now it is predicted to climb US$ 7,234.5 Mn during forecast period from 2018 to 2026. The market is estimated to reach a compound annual growth rate (CAGR) of 20.1% from 2018 to 2026.

Multiple Applications and Diverse Dominating Factors in CRISPR and Cas Genes Market

The report from market research on CRISPR and cas genes industry has marked its division on the basis of region, end-user, application, and product type. DNA-free cas and vector-based cas are the two types in which the CRISPR and cas genes market is bifurcated on the basis of product type. Between these two types, the vector-based cas section has dominated the market at international levelin 2017. This expression system is helpful for the researchers who are focusing to enrich Cas9-expressing cells and concentrate on the establishment of a stable cell line. The vector-based cas is available with an analytical that is used to support the creation of durable cell lines. These lines are designed with minimal possible background expression.

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The major advantages of the DNA-free cas segment boost growth in the CRISPR and cas genes market. DNA-free cas components are used for the reduction of potential off-targets. They also find application to trace correlations with human illnesses.

Knockout/activation, functional genomics, disease models, and genome engineering are the classification types in the CRISPR and cas genes market on the basis of application in different verticals. Contract research organizations, government and academic research institutes, pharmaceutical and biotechnology companies are some of the key end-use industries in the market. Further, as per the market analysis report on CRISPR and cas genes market, the industry is spread in different regions that include Middle East & Africa, Latin America, Asia Pacific, Europe, and North America.

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The industry players from market have adopted inorganic and organic growth strategies for the expansion of product offerings, capturing market share, increasing consumer base, and strengthening geographical reach. Some of the key players in the CRISPR and Cas genes market include Dharmacon, Synthego, GenScript, OriGene Technologies, Inc., Applied StemCell, Inc., Addgene, and Cellecta, Inc.

Genome Engineering to Dominate CRISPR and Cas genes market

On the basis of application, the genome engineering section has dominated in the CRISPR and cas genes market. The genetic materials can be added, detached, and altered with the help of CRISPR technology at any specific location in the genome. Genomic engineering is related to the synthetic assembly of comprehensive chromosomal DNA, and it has been commonly taken from natural genomic sequences.

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The CRISPR and Cas genes market has been dominated by pharmaceutical and biotechnology companies in terms of end-user. The strategic partnerships and innovations may boost growth in the market.

North America and Europe are the regions that account for the maximum share in the CRISPR and Cas genes market. Rising technological advancements and research activities are driving growth in the market.

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CRISPR and Cas Genes Market: The DNA-free Cas Segment Boost Growth in the Global Market - BioSpace

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Gene Changes Previously Thought as Neutral Are Now Shown to Be Deleterious in Yeast – Gilmore Health News

Posted: July 3, 2022 at 2:12 am

The early 1960s saw the crack of the genetic code. This scientific breakthrough brought advancement in biological and cellular studies. The underlying feature of the genetic code explains how DNA converts into protein. Codons are three-letter units found in DNA orders. Within these codons are the 20 amino acids that make up proteins in the human body. Mutations occur in gene codes as a letter or point change.

Genes

Read Also: Congenital Mirror Movement Disorder Caused by a Mutation in the RAD51 Gene French Study Shows

There are two common types of these mutations. Silent mutations are changes in different parts of the DNA that dont affect the protein order produced. Non-silent (non-synonymous) mutations cause changes in the protein order.

Previously held scientific beliefs have been that these silent mutations are neutral. However, a new study has demonstrated these silent changes are dangerous. This study is available in the journal Nature.

Various studies have attempted to clarify the role of mutations in gene expression and diseases. The DNA sequence in proteins contains point changes that are silent in several cases. The sequencing of protein is unaffected by the changes. The point mutations are changes that do not affect protein sequence and are thought to be neutral since the 1960s. Researchers conducted experimental studies on the mechanisms of yeast gene engineering. The study result shows a high negative impact of silent gene changes (75.9%).

The results of this current study have a wide-ranging effect. In checking diseased mutations, scientists can recognize the role of both silent and non-silent mutations. The research in this innovative investigation also aimed to identify exceptions to the non-neutrality of silent mutations. Although some scientists believe that silent mutations are not neutral, there has not been much literature on the non-neutral exceptions.

The study subject was yeast. Since yeast has a short growth time and is tiny, the scientists checked the impact of these silent mutations on the organism fairly rapidly, accurately, and easily.

Read Also: Genomic Inversions Are More Common in Genetic Diseases Study Shows

The study scientists used CRISPR/Cas9 genome editing to determine more than 8000 mutant yeast sequences. Each of the sequences contained either a silent, non-silent, or nonsense mutation. Although 1.3% of the silent mutations discovered were highly advantageous, 75.9% were detrimental.

Additionally, the study investigated other mechanisms by which these silent changes affected Darwinian fitness. They discovered that both silent and non-silent mutations affect the gene expression level and the magnitude of these expressional changes shows the fitness effect.

This study is significant in disease study and evolution biology. Because these silent mutations are harmful in yeast, clinicians and researchers can re-examine their previously held belief of its non-deleterious effects. This is significant because these silent mutations are now equally important in the pathogenesis of diseases.

The current study shows severe negative impacts of these silent mutations in yeast. Decades of consensus on the neutrality of silent gene changes may now be proven false. Understanding the mechanism of these changes can be beneficial for gene expression studies.

Read Also: Scientists Identify Gene Complex That Regulates Ribosome Production

Synonymous mutations in representative yeast genes are mostly strongly non-neutral

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Gene Changes Previously Thought as Neutral Are Now Shown to Be Deleterious in Yeast - Gilmore Health News

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Eligo unlocks next generation of precision genetic medicine with foundational patents granted covering in-situ base editing of the microbiome and…

Posted: July 3, 2022 at 2:12 am

Base editing technology has already shown significant potential for genome engineering of human cells to treat serious and life-threatening hereditary diseases. Recent scientific advances have identified causative roles for genes from commensal microbiota in the pathogenesis or aggravation of an increasing number of diseases, such as lupus, rheumatoid arthritis and myocarditis. In-situ precision engineering of the microbiome with gene editing technologies, including base editing technology, represents a promising frontier of medical innovation and opens new and highly valuable therapeutic opportunities.

The two broad and foundational patents granted to Eligo, US11,224,621 and US11,376,286, cover the unique ability to modify with unprecedented precision the genome of deeply-engrafted resident bacteria without killing them. In particular, it enables targeted and durable modification or inactivation of bacterial proteins from essential commensal bacteria. This approach can uniquely address key unmet needs in microbiome-related diseases, by removing bacterial triggers of disease while maintaining commensal bacteria that are essential to our health.

Eligo revealed, during a presentation at CRISPR 2022 conference in Boston, that a single oral dose of a base-editor equipped medicine led to the precise editing of up to 100% of a target bacterial population in the gut of animals in a matter of hours. They also demonstrated that such edits were stable over time.

"The grant of these broad patents is an important milestone for Eligo Bioscience as it significantly broadens the potential for our proprietary gene editing platform in microbiome-related diseases, in addition to the use of CRISPR to kill specific bacterial populations." said Dr. Xavier Duportet, Chief Executive Officer of Eligo Bioscience. "It consolidates our position as pioneer and leader in the field of in situ prokaryotic editing. Eligo Bioscience has indeed the earliest position both in fields of CRISPR killing and now base editing also."

About the patents

Patents US11,224,621 and US11,376,286 are members of a patent family published as WO2021/204967, entitled "Modulation of microbiota function by gene therapy of the microbiome to prevent, treat or cure microbiome-associated diseases or disorders'' and cover method of use and composition of matter claims respectively. Eligo is prosecuting multiple patent applications outside of the US as well.

About Eligo

Eligo Bioscience is the world leader in microbiome gene editing therapy and is advancing a highly differentiated pipeline of precision medicines to address unmet medical needs in inflammation, autoimmunity and oncology caused by the expression of specific deleterious bacterial genes by our microbiome.

Eligo was founded by scientists from The Rockefeller University, where CRISPR-based antimicrobials were invented, and by scientists from MIT. Eligo was named a Technology Pioneer by the World Economic Forum in 2017. Eligo has received venture capital funding from Khosla Ventures and Seventure Partners, and non-dilutive funding from GlaxoSmithKline, the European Commission, CARB-X, and Bpifrance.

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Contact:DUPORTET Xavier [emailprotected]

SOURCE Eligo Bioscience

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Eligo unlocks next generation of precision genetic medicine with foundational patents granted covering in-situ base editing of the microbiome and...

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Directors Kristina Buoyt and Bruno Samper on their 10-year odyssey to make bio-punk fairy tale ‘Vesper’ – Screen International

Posted: July 3, 2022 at 2:12 am

Lithuanias Kristina Buoyt and Frances Bruno Sampers Vesper is world premiering this weeked in the Crystal Globe Competition at the Karlovy Vary International FIlm Festival.

The film is a dystopian sci-fi in which 13-year-old Vesper, played by Raffiella Chapman, tries to eke out an existence on an ecologically ravaged Earth. Caring for her paralysed father, Vesper comes across a mysterious girl (Rosie McEwen) who originates from the Citadel the place where the rich and powerful dwell. UK actor Eddie Marsan co-stars.

Vesper marks a return to the festival for Buoyt and Samper after their 2012 film Vanishing Waves, directed by Buoyt and co-written by Samper, debuted in the festivals now defunct East of the West competition garnering a special mention. It went on to be a sizable hit on the festival circuit and beyond.

Vesper is produced by Lithunian production company Natrix Natrix and France- based Rumble Fish Productions. Co-producers are Belgiums 10.80 Films and French company EV.L Prod. International sales are handled by UK based Anton. The films has already been sold to a number of territories including North America (IFC Films) and UK (Signature Entertainment)

Aside from a segment in 2014s ABCs of Death 2, its been 10 years since your previous film, Vanishing Waves. Was it difficult to bring Vesper to the big screen?

Kristina Buoyt: During these 10 years, we were actually pretty busy. We have been developing different English- language film projects that we wanted to shoot abroad. The majority got lost in so-called development limbo. Then we decided to return to our roots - to write a script that would be ambitious but possible to shoot in Lithuania. That is how Vesper came about.

Bruno Samper: Looking back now, we realise that we integrated the lesson learned from these 10 years into the plot for Vesper dont search for a utopic promised land elsewhere, but instead use your roots and your ambition to change the reality of where you are.

What inspired the story of the film?

KB: Our desire was to make a movie about hope. Even in the worst and most desperate situations, if we are able to see beauty, it wont be easy but we will always have a reason to live, to fight, and to change the order of things. We would like the film to touch especially the young generation who constantly hear that our world is dying and theres no future. Young people dont merely want to survive, they want to live. The pandemic very forcefully brought that point home.

BS: Also, we wanted to create a world never seen on the big screen and the biopunk fairy-tale genre gave us this possibility. We worked on this universe for several years. We did a lot of research about the most recent innovations in organic architecture, bio-design, genetic engineering, and even the sexuality of plants.

How did you find Raffiella Chapman andgo about finding her and preparing her for the role?

KB: Raffi is real gem - talented, a fast-learner and hard-worker, and she totally embodies her generation. She is all a director could wish for. When Bruno saw her casting video, he saw Vesper.

BS: She was totally invested in the project.The shooting could be very demanding at times, and she always gave more than her best. Her parents were also very supportive which was a huge help.

What influenced you when making the film?

KB: Beyond the science-fiction framework, Vesper is an initiation story with a message for a society that is turning more and more towards escapism. Faced with problems - economic, social, political - more and more people prefer to flee into the denial of reality rather than face and solve the issues.

Also, for us it was very important to create a character who refuses to be a victim and manages to stand up and go forward despite all difficulties.

Is there a certain amount of difficulty for filmmakers in small regions such as the Baltics to make genre films?

KB: Its a question of time, the young generation doesnt make this separation anymore between genre and non-genre. Of course, the budget is always a challenge. There is certainly the energy, the desire and the ambition but we need to bring more private investment for Baltics projects. We hope Vesper will show that making a film like Vesper is possible even within the current economic structures of the film industry.

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Directors Kristina Buoyt and Bruno Samper on their 10-year odyssey to make bio-punk fairy tale 'Vesper' - Screen International

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SMART research reveals promising uses of non-destructive sensors to aid food security and enhance sustainable agriculture – EurekAlert

Posted: July 3, 2022 at 2:12 am

SMART research reveals promising uses of non-destructive sensors to aid food security and enhance sustainable agriculture

Recent advancements of in vivo and surface or airborne sensors to diagnose plant health will improve crop growth and minimise resources used

Singapore, 30 June 2022 Researchers from the Disruptive & Sustainable Technologies for Agricultural Precision (DiSTAP) Interdisciplinary Research Group (IRG) at the Singapore-MIT Alliance for Research and Technology (SMART), MITs research enterprise in Singapore, and their local collaborators from the Institute of Materials Research and Engineering (IMRE), Agency for Science, Technology and Research (A*STAR) as well as the Department of Chemical and Biomolecular Engineering (ChBE), National University of Singapore (NUS) have published a review that discusses the recent advances in non-destructive plant health monitoring, ranging from electrochemical-based arrays to nanosensors and electronic noses, and why tracking plant health is an attractive and sustainable strategy that can be used to optimise crop growth practices. The review aims to inspire future developments of non-destructive technologies for plant health diagnosis.

To meet the pressing need for global food security and pave the way for sustainable agriculture, the advancement and adoption of agricultural technology are critical in alleviating the conditions of 193 million people in the world who are acutely food insecure. However, sustainable practices need to be implemented to minimise environmental destruction when improving crop yields and productivity. Traditionally, farmers will often only be able to notice signs of their crops' health deteriorating at a stage where reparative measures are limited.

Additionally, the current testing via chromatography-based analytical techniques is destructive as it requires, punching out leaf samples that would cause wounding and tissue breakdown. These methods are also laborious, including lab-based extraction and processing of multiple plant samples for every data point. Thus, scientists have been advancing the field of precision agriculture, developing novel sensors and analytical tools to help farmers guide farm-management decisions. The use of non-destructive or minimally invasive sensors for plant metabolites has emerged as an essential analytical tool for real-time monitoring of plant signalling pathways and plant response to external conditions that indicate overall plant health. These sensors could be incorporated into future farming practices and implemented in high-tech urban farms that use precision, predictive and environmentally controllable farming.

In light of the increasing demand for food due to the growing global population and concern over food security, developing innovative and sustainable technologies and tools to improve crop yield and quality is timely and essential. Non-destructive plant health monitoring stands as one of the key strategies for improving crop growth practices, complementing current agricultural techniques such as crop rotation, intercropping and genetic modification, said Dr Gajendra Pratap Singh, Principal Investigator and Senior Scientific Director at DiSTAP.

The team explained their research in the review article titled Non-destructive Technologies for Plant Health Diagnosis, published in the prestigious journal Frontiers in Plant Science. The findings showed that the sensors could be broadly categorised into those that detect internal (in vivo sensors) and external (plant surface and airborne) signalling molecules.

In vivo sensors are based on either electrochemical sensors or plant nano-bionic sensors. Recent nanotechnology advances have enabled electrochemical and plant nano-bionic sensors to exhibit higher sensitivity and selectivity by utilising unique electrochemical and optical properties. Besides internal signalling molecules, plants also emit signals at the surfaces of their organs as well as through airborne metabolites such as volatile organic compounds (VOCs) for inter-plant communication. Detection of internal and external cues, such as surface and airborne compounds, allows for the non-invasive and real-time diagnosis of plant diseases.

Furthermore, the sensors convert plant signals into digital signals to establish direct communication between plants and growers. By tapping into plants physiological events in real-time, non-destructive sensors enable prompt adjustment of environmental conditions to augment crop productivity while minimising resource use, added Dr Tedrick Thomas Salim Lew, Scientist at A*STARs IMRE and Adjunct Assistant Professor at NUS ChBE, who was the corresponding author of the article.

The review gave insights into sensors which are versatile and have been successful in extracting spatiotemporal information from a variety of agriculturally important plant species. The sensors will open the possibility of real-time feedback control schemes that can aid in the precise application of fertilisers and plant growth regulators to maximise growth, as well as facilitate timely intervention to minimise yield loss from plant stress, said Mervin Ang, Research Scientist at DiSTAP and first author of the article.

To address profound challenges in food production in Singapore and the world, DiSTAP has, over the years, introduced novel analytical tools that are rapid, non-destructive and have the ability to detect and provide information from living plants in real-time. This latest review seeks to advance technologies which can be applied to study agriculturally relevant crops in the field, bridging the knowledge gap between model plants commonly used in plant biology and economically important crops.

The review was supported by the National Research Foundation of Singapore under its Campus for Research Excellence And Technological Enterprise (CREATE) programme and the Agency for Science, Technology and Research (A*STAR) Career Development Fund.

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Frontiers in Plant Science

Literature review

Not applicable

Non-destructive Technologies for Plant Health Diagnosis

30-Jun-2022

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SMART research reveals promising uses of non-destructive sensors to aid food security and enhance sustainable agriculture - EurekAlert

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Century Therapeutics to Present at the LifeSci Partners 2nd Annual Genetic Medicines Symposium – GuruFocus.com

Posted: July 3, 2022 at 2:12 am

PHILADELPHIA, June 21, 2022 (GLOBE NEWSWIRE) -- Century Therapeutics ( IPSC), an innovative biotechnology company developing induced pluripotent stem cell (iPSC)-derived cell therapies in immuno-oncology, today announced that Lalo Flores, Ph.D., Chief Executive Officer, will participate in a fireside chat at the LifeSci Partners 2nd Annual Genetic Medicines Symposium on June 28, 2022, at 9:30 AM ET.

A live webcast of the fireside chat will be available on the Events & Presentations page in the Investors section of the Companys website at https://investors.centurytx.com/events-and-presentations. A replay of the webcast will be archived on the Companys website for 30 days following the presentation.

About Century Therapeutics

Century Therapeutics ( IPSC) is harnessing the power of adult stem cells to develop curative cell therapy products for cancer that we believe will allow us to overcome the limitations of first-generation cell therapies. Our genetically engineered, iPSC-derived iNK and iT cell product candidates are designed to specifically target hematologic and solid tumor cancers. We are leveraging our expertise in cellular reprogramming, genetic engineering, and manufacturing to develop therapies with the potential to overcome many of the challenges inherent to cell therapy and provide a significant advantage over existing cell therapy technologies. We believe our commitment to developing off-the-shelf cell therapies will expand patient access and provide an unparalleled opportunity to advance the course of cancer care. For more information on Century Therapeutics please visit http://www.centurytx.com.

Century Therapeutics Forward-Looking Statement

This press release contains forward-looking statements within the meaning of, and made pursuant to the safe harbor provisions of, The Private Securities Litigation Reform Act of 1995. In some cases, you can identify forward-looking statements by terms such as may, might, will, should, expect, plan, aim, seek, anticipate, could, intend, target, project, contemplate, believe, estimate, predict, forecast, potential or continue or the negative of these terms or other similar expressions. These statements are not guarantees of future performance These risks and uncertainties are described more fully in the Risk Factors section of our most recent filings with the Securities and Exchange Commission and available at http://www.sec.gov. You should not rely on these forward-looking statements as predictions of future events. The events and circumstances reflected in our forward-looking statements may not be achieved or occur, and actual results could differ materially from those projected in the forward-looking statements. Except as required by applicable law, we do not plan to publicly update or revise any forward-looking statements contained herein, whether as a result of any new information, future events, changed circumstances or otherwise.

For More Information: Company: Elizabeth Krutoholow [emailprotected]Investors: Melissa Forst/Maghan Meyers [emailprotected]Media: Joshua R. Mansbach [emailprotected]

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Life Edit Therapeutics Appoints Joy A. Cavagnaro to Its Scientific Advisory Board – Business Wire

Posted: July 3, 2022 at 2:12 am

MORRISVILLE, N.C.--(BUSINESS WIRE)--Life Edit Therapeutics Inc., an ElevateBio company focused on next-generation genome editing technologies and therapeutics, today announced the appointment of Joy A. Cavagnaro, Ph.D., DABT, Fellow ATS, RAC, FRAPS, to its Scientific Advisory Board (SAB). Dr. Cavagnaro is an internationally recognized expert in science-based regulatory strategies and translation of research to preclinical and product development, with an emphasis on genetic medicines.

We are thrilled to welcome Joy to our Scientific Advisory Board as we rapidly advance our gene editing platform to harness the vast potential of our novel nucleases and base editors as therapeutics, said Mitchell Finer, Ph.D., Chief Executive Officer, Life Edit Therapeutics and President, R&D, ElevateBio. Joys expertise in drug discovery and development will complement our esteemed Scientific Advisory Board slate, and collectively our advisors will continue to help Life Edit and our partners further therapeutic programs to address the tremendous unmet needs of genetically-defined diseases.

Joy A. Cavagnaro, Ph.D., DABT, Fellow ATS, RAC, FRAPS, has more than 40 years of experience in the biotechnology industry and is the President and Founder of Access BIO, where she consults globally on science-based preclinical development strategies. She served at the United States Food and Drug Administrations (FDA) Center for Biologics Evaluation and Research (CBER) and was appointed to Senior Biomedical Research Service. Dr. Cavagnaro was also the past Chair of the Regulatory Affairs Professional Society (RAPS), President of the National Capital Area Chapter of the Society of Toxicology (SOT), and recipient of the Societys 2019 Arnold J. Lehman Award. Later this year, the American College of Toxicology is expected to recognize Dr. Cavagnaro with the Distinguished Scientist Award in Toxicology. In addition, Dr. Cavagnaro has co-authored numerous white papers, articles, and book chapters related to various aspects of preclinical safety assessment. She received her Ph.D. in Biochemistry from the University of North Carolina at Chapel Hill, followed by post-graduate work at Duke University and Boston University Medical Centers.

Life Edit holds one of the largest and most diverse arrays of novel RNA-guided nucleases and base editors that offers flexible editing and unprecedented access to the genome, said Joy Cavagnaro, Ph.D., DABT, Fellow ATS, RAC, FRAPS. This powerful technology platform unlocks enormous potential for the development of novel therapeutics, and I look forward to working with the company as they continue to advance their gene editing platform and own internal pipeline of in vivo gene therapies for patients in need.

About Life Edit Therapeutics Inc.

Life Edit Therapeutics, an ElevateBio company, is a next-generation genome editing company that has built a highly innovative platform with one of the worlds largest and most diverse collections of novel RNA-guided nucleases (RGNs) and base editors. The platform allows Life Edit to target any genomic sequence and develop novel human therapeutics for the most challenging genetic diseases by enabling ex vivo engineering for cell therapies and regenerative medicines and in vivo delivery of gene therapies. In addition to developing its own pipeline of cell and gene therapies, Life Edit Therapeutics will continue to strengthen its platform of genome-editing enzymes, provide gene-editing expertise to strategic partners, and form other third-party partnerships to discover and develop new therapies. For more information visit lifeeditinc.com or on LinkedIn or Twitter.

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Cucumber, Squash, Melon & Other Cucurbit Insect Pests

Posted: July 3, 2022 at 2:10 am

Cucumber Beetles

Cucumber beetle damage can occur on the watermelon fruit.Barbara H. Smith, 2018,HGIC, Clemson Extension

The spotted, striped, and banded cucumber beetles are very harmful to cucurbits (members of the gourd family, including cucumbers, melons, pumpkins, and squashes), particularly young plants. Beetles commence feeding on plants as soon as they emerge and either kill the plants or greatly slow growth. In cucurbit plantings throughout South Carolina, beetles have been observed entering the soil through cracks and feeding on seedlings below the soil surface. Beetles are present throughout the growing season and feed on all parts of the plant, including the flowers and fruit.

Spotted cucumber beetle adult (Diabrotica undecimpunctata howardi).J.P. Michaud, Kansas State University, http://www.insectimages.org

Cucumber beetles also transmit bacterial wilt of cucurbits. This disease overwinters (survives the winter) in the intestines of the beetles and is spread from plant to plant as the beetles feed. Infected plants eventually wilt and die. Many new varieties of cucurbits have resistance to bacterial wilt. Cucumber beetle larvae (immature forms) feed on the roots and bore into both roots and stems of cucumber plants.

Striped cucumber beetle (Acalymma vittatum).Clemson University USDA Cooperative Extension Slide Series, http://www.insectimages.org

The yellowish-green adult spotted cucumber beetle (Diabrotica undecimpunctata howardi) has 11 black spots and a black head with black antennae. The yellowish-white larvae have brown heads and are -inch (19 mm) long when grown.

The yellow adult striped cucumber beetle (Acalymma vittatum) is about 1/5-inch (5 mm) long with three longitudinal black stripes on the top wings. The whitish larvae are about inch (8.5 mm) when grown.

Banded cucumber beetle (Diabrotica balteata).Ottens, University of Georgia, http://www.insectimages.org

The adult banded cucumber beetle (Diabrotica balteata) is yellowish-green with three bright green stripes or bands running across the wing covers. In a home vegetable garden, control measures include the use of fabric row covers, such as spun-bonded polyester. These covers provide an effective barrier between the insect and young plants. Remember to remove the covers during flowering to ensure pollination. Handpicking to remove the beetles is time-consuming but effective. In addition, several predators and parasites are enemies of cucumber beetles. Eliminate weeds in and around the garden.

Adult squash beetle (Epilachna borealis), with spiny larva at left. Clemson University USDA Cooperative Extension Slide Series, http://www.insectimages.org

The squash beetle (Epilachna borealis) is one of two species of Coccinellidae known to occur in the United States that eat plant material rather than other insects. The squash beetle feeds upon the leaves of cucurbits. The other species, the Mexican bean beetle (Epilachna varivestis), a close relative of the squash beetle, is a serious bean pest.

The adult of the squash beetle overwinters in crop debris. All other lady beetles are beneficial because they feed on insect pests, such as aphids and scale insects.

Destroy crop residues after harvest and reduce overwintering sites by tilling.

Two-spotted spider mites (Tetranychus urticae) can be a serious problem on cucurbits, especially on watermelons and cantaloupes, during hot, dry weather. These tiny mites feed on the contents of individual cells of the leaves. This damage appears as pale yellow and reddish-brown spots ranging in size from small specks to large whitish, stippled areas on the upper sides of leaves. Damage can develop very quickly, and the mites can kill or seriously stunt the growth of plants. Because of their small size, spider mites are hard to detect until vines are damaged with hundreds of mites on each leaf. Certain insecticides applied at planting or as a foliar spray for insect control apparently contribute to severe outbreaks of mites on melons by killing their natural enemies.

Typical stippling damage to leaves from two-spotted spider mites (Tetranychus urticae).Whitney Cranshaw, Colorado State University, http://www.insectimages.org

Extreme close-up of two-spotted spider mite (Tetranychus urticae).David Cappaert, Michigan State University, http://www.insectimages.org

Insecticidal soaps generally offer adequate control when applied before the numbers are too high. Make two applications five days apart. Squash leaves are easily burned by insecticidal soaps, so use the most dilute concentration recommended and use sparingly. Do not spray plants in direct sun or if plants are drought-stressed. Spider mites can also be controlled with neem oil extract. Mites can be removed with a strong spray of water. Predatory mites and beneficial insects, such as lady beetles and minute pirate bugs, are important natural controls.

Melon aphids, also known as cotton aphids (Aphis gossyppi).Mississippi State University Archive, Mississippi State University, http://www.insectimages.org

Melon aphids (Aphis gossyppi) and several other aphid species attack cucurbits, particularly melons and cucumbers. Melon aphids vary in size and color from light yellow to green to black. Some are winged, while others are wingless.

They are found chiefly on the underside of the leaves, where they suck the sap from the plants and cause a reduction in the quality and quantity of the fruit. Infested leaves curl downward and may turn brown and die. The melon aphid also is one of the chief vectors in transmitting Cucumber mosaic virus. Usually, cucurbits are not attacked by aphids until the vines form runners.

Consider natural controls when making treatment decisions. Beneficial insects are extremely important in keeping aphid populations in check. Infestations usually are higher in hot, dry summers following cool, dry springs, which have reduced the efficiency of the natural enemies. In addition to natural enemies, you can spray leaves with soapy water, then rinse with clear water. Spraying with insecticidal soap, planting in aluminum foil-covered beds, and filling yellow pans with water to trap the aphids are also effective control measures.

An adult squash bug (Anasa tristis).Zack Snipes, 2020, Clemson Extension

The squash bug (Anasa tristis) is one of the most common and troublesome pests in the home vegetable garden. Squash plants frequently are killed by this sap-feeding pest. Leaves of plants attacked by the bugs may wilt rapidly and become brittle. Winter varieties of squash, such as Hubbard and Marrows, are much more severely damaged by the squash bug than other varieties. Control is required to protect squash in the home garden.

The adult squash bug is rather large, brownish-black, and flat-backed. It is about -inch (1.6 cm) long and approximately as wide. The young, called nymphs, are whitish to greenish-gray, with black legs. They vary in size from tiny, spider-like individuals when first hatched to maturing nymphs, which are nearly as large as the winged adults.

Squash bug egg mass and freshly hatched nymphs (Anasa tristis).Zack Snipes, 2020, Clemson Extension

Squash bugs overwinter in protected places as unmated adults. They appear rather slowly in the spring. They mate and begin laying egg clusters about the time vines begin to grow and spread. Eggs are yellowish-brown to brick red in color and are laid in clusters of a dozen or more on the leaves. They hatch in about 10 days into nymphs that become adults in four to six weeks. Only one generation of bugs develops each year. New adults do not mate until the following spring.

The squash bug is secretive in its habits. Adults and nymphs may be found clustered about the crown of the plant, beneath damaged leaves, and under clods or any other protective ground cover. They scamper for cover when disturbed. The secretive nature of squash bugs can be used to your advantage in controlling these pests. Place a small, square piece of old shingle or heavy cardboard under each squash plant. As bugs congregate under it for protection, simply lift the trap and smash them with your hoe (or shoe). Other control methods include early planting and removing eggs and nymphs by hand.

Remove and destroy vines and discarded fruit after harvest to eliminate overwintering sites. Early detection of squash bugs is very important, as they are difficult to control and can cause considerable damage. Apply insecticides when nymphs are small, as adults are more difficult to kill.

Squash vine borer larva (Melittia cucurbitae) and damage.Alton N. Sparks, Jr., University of Georgia, http://www.insectimages.org

Squash vine borer larva (Melittia cucurbitae) and damage.Alton N. Sparks, Jr., University of Georgia, http://www.insectimages.orgThe squash vine borer (Melittia cucurbitae) ranges from Canada to Argentina and is the most serious enemy of squashes and gourds. It causes much trouble where only a few plants are grown in gardens. It rarely attacks cucumbers and melons. Great variations exist in the susceptibility of squash and pumpkin varieties. Butternut and Green-Striped Cushaw varieties are practically immune to attack, but Hubbard squash is highly susceptible.

Close-up of squash vine borer larva (Melittia cucurbitae).Clemson University USDA Cooperative Extension Slide Series, Bugwood.org

Damage is caused by larvae (immature forms) tunneling into stems. This tunneling often kills plants, especially when the larvae feed in the basal portions of vines. Sometimes fruits are also attacked. Sudden wilting of a vine and sawdust-like insect waste (frass) coming from holes in the stem are evidence of an attack.

The adult is one of the moths known as clear wings because the hind wings are almost without scales. It is 1 inches (3.8 cm) in wing expanse and metallic greenish-black. Hind legs are fringed with black and orange hairs, and markings of similar color occur over much of the abdomen.

The moths are day fliers and are often mistaken for wasps. Larvae are white, heavy-bodied, and considerably over 1-inch (2.54 cm) long when fully grown.

The insect overwinters in the soil as a larva or pupa (a non-feeding stage where the larva changes to an adult) enclosed in a cocoon. Moths emerge in early summer and lay eggs on the stems of the plants, usually late May in the South. Upon hatching, larvae bore into vines and complete their development in four or more weeks. Then they leave the plant, crawl into the soil, spin a cocoon, and transform into a pupa. There are two generations in South Carolina.

In a vegetable garden, various measures can be taken to control this pest. Till the soil in late winter to expose overwintering insects. Rotate squash to another location in the garden each season. Destroy vines that have been killed to break the life cycle. You can slit the infested vine lengthwise and remove borers or kill them with a long pin or needle. Place soil over slit stem after removing the borer to encourage root development and keep plants well-watered. Plant as early as the weather allows since borers do not emerge until early summer.

Tromboncino is an Italian heirloom cultivar of the species Cucurbita moschata, aka the butternut squash. Most butternuts are grown as winter squash, where the fruit is harvested when mature, sweet, and dense. However, like summer squash, tromboncino squash are harvested and eaten when the fruits are young and tender. The best part is that all butternut squashes are essentially immune to squash vine borer due to the species dense, solid stems. This trait holds for Tromboncino as well. For more information, please see: https://hgic.clemson.edu/tromboncino-squash/

The pickleworm (Diaphania nitidalis) severely damages cucumbers, cantaloupes, summer squash, and pumpkins. It also feeds on other cucurbits, such as winter squash and watermelons, but usually does little damage.

Pickleworms (Diaphania nitidalis) bore into cucurbit fruit, and their frass is pushed out.Joey Williamson, 2016 HGIC, Clemson Extension

Pickleworm damage occurs when the caterpillars tunnel in flowers, buds, stems, and fruits. They prefer the fruits. Frass (sawdust-like insect waste) often protrudes from small holes in damaged fruits. At times, damaged fruits cannot be recognized until they are cut open. Damaged fruits are not edible. Flowers, buds, and sometimes entire plants may be killed.

In South Carolina, pickleworms starve or freeze to death during the winter. They overwinter in Florida and spread northward each spring. Severe damage usually does not occur before summer in South Carolina. Heavy populations generally do not build up before the first flower buds open; however, late crops may be destroyed before blossoming. The pickleworm has complete metamorphosis, passing through four distinct stages (egg, larva, pupa, and adult) during development.

Pickleworm larvae (Diaphania nitidalis) inside fruit.Clemson University USDA Cooperative Extension Slide Series, http://www.insectimages.org

Eggs are yellow, irregularly shaped, and resemble grains of sand. They are laid singularly or in small groups on leaves and hatch in three to four days.

Larvae feed first on buds, blossoms, and tender terminals but soon move to the fruits. These brown-headed caterpillars molt (shed their skin) four times before they become about -inch (1.9 cm) long and fully grown in nine to 28 days. The body is yellowish-white at first, but many reddish-brown spots appear on the back after the first molt. After the last molt, the caterpillar loses its spots and becomes solid green or copper. Finally, the caterpillar stops feeding, becomes pink to pale green, and spins a thin silk cocoon around itself, usually within a folded-over portion of a leaf where it pupates (becomes a pupa).

Pupae (the non-feeding stage where the larva changes to an adult) are light to dark brown and slightly more than -inch long. Pupae are usually found in a rolled leaf. However, they have been found inside cantaloupe and summer squash in rare instances. Adults usually emerge after seven to 10 days.

Adults are brownish-yellow moths that have a rounded brush of hairs at the rear of the body. The brownish-yellow wings have a purplish sheen, translucent yellow-white centers, and a spread of about 1 inch (2.54 cm). Moths are active at night.

Select early maturing varieties and plant as early as possible before pickleworm population peaks. Destroy damaged fruit and crush rolled sections of leaves to kill pupae. The more resistant varieties are Butternut 23, Summer Crookneck, Early Prolific Straightneck, and Early Yellow Summer Crookneck.

Begin spraying susceptible cucurbits for pickleworms when the first buds or flowers appear and spray every 4 to 7 days with Bacillus thuringiensis (Bt) or every 7 days with spinosad. Always spray in the evening to enhance control and to reduce the impact on pollinating insects. See Table 2 for products containing Bt or spinosad.

Whiteflies are commonly found on the underside of cucurbit leaves. Zack Snipes 2019Zack Snipes 2016, Clemson Extension

Whiteflies are approximately one-thirty-second of an inch long and appear white or cream-colored. They undergo four nymphal stages before they pupate and become adults. Typically, whiteflies are found in groups and are commonly on the underside of plant leaves.

Whiteflies are a common pest of cucurbit crops and may cause silverleaf disorder and vector (or spread) numerous harmful viruses. Whiteflies also weaken plants by feeding on their sap. Sticky honeydew is excreted as whiteflies feed. As honeydew is excreted, it falls to lower parts of the plants and often develops becomes covered with a dark-colored sooty mold. This occurrence reduces the photosynthetic capability of the plant and can result in reduced yields.

Whiteflies can be managed culturally by providing proper nutrition and irrigation for plants. Cultivars of cucurbits with resistance against viruses can also help in reducing yield loss. In addition, using reflective mulches has proven to be effective against whitefly feeding and disease transmission. In South Carolina, whitefly populations are higher in the warmer months going into the fall, which allows spring crops the opportunity to avoid severe infestation. As with many other soft-bodied pests, there are many beneficial insects that help manage whitefly populations, such as lacewings, bigeyed bugs, lady beetles, and minute pirate bugs. Many products effective against aphids are also effective in managing whiteflies.

White and brown melonworm adults lay white to greenish eggs in small clusters, typically on the underside of cucurbit leaves.Zack Snipes 2019, Clemson Extension

The melonworm (Diaphania hyalinata) is a mid-summer to fall pest of summer and winter squash and cucumber in South Carolina. The pests migrate from tropical regions of Florida each year and usually arrive by late June or July. Higher population levels are usually observed in fall-planted cucurbits. After eggs are laid, the larvae (caterpillars) will undergo five instars before pupating. The later instars are pale to dark green with two horizontal cream-colored stripes down the length of their back. The larvae feed on the leaf tissue, often leaving the veins intact, creating a skeletonized look. It is common to see leaves rolled or folded over to serve as a hiding spot as the melonworm pupates.

The adult moth is very distinguishable by its pearly white body, wings with a thick, dark outline, and brushy hairpencils at the tip of its abdomen. The melonworm usually completes its lifecycle within thirty days.

A melonworm larvae and a pile of frass left behind.Zack Snipes 2018, Clemson Extension

Spring planted cucurbits will escape most melonworm damage. In fall-planted gardens, careful scouting will help reduce infestations and damage. Many beneficial insects prey on or parasitize the melonworm, such as parasitic wasps, tachinid flies, ground beetles, and soldier beetles; therefore, avoid applying broad-spectrum chemicals, such as pyrethroids and neonicotinoids for melonworm management. Formulations of Bt and neem work well for managing melonworm and have less of an impact on beneficial insect populations.

Reference: http://entnemdept.ufl.edu/creatures/veg/leaf/melonworm.htm

Table 1 lists the natural and conventional contact insecticides for the control of insect pests of cucumbers, squash, and melons. However, limit the use of broad-spectrum contact insecticides, such as malathion, bifenthrin, cyhalothrin permethrin, cypermethrin, and pyrethrin, all of which kill beneficial predators and parasites of insect pests. Monitor the vegetables for the buildup of insect pests. Natural, less toxic pesticides may give good control and should be tried first.

Table 2 lists examples of available brands and products of natural and contact insecticides labeled for use on cucumbers, squash, and melons. It also gives the pre-harvest interval (PHI) for each insecticide, which is the number of days to wait between insecticide application and harvest.

For aphid or spider mite control, use insecticidal soap sprays first. Alternatively, control heavy populations of aphids or spider mites with sprays of neem oil extract. Cucumber beetles or squash beetles can be somewhat effectively controlled effectively using spinosad, but wait three days after spraying before harvest.

For vine borers and pickleworms control after mid-June, apply neem oil extract weekly, and spray in the evening to reduce the impact on pollinating insects. Bifenthrin, cyhalothrin, or cypermethrin will control cucumber beetles, squash bugs, squash vine borers, and pickleworms, but wait 3, 7, or 1 days, respectively, after spraying and before harvest.

Table 1. Natural, Less Toxic Pesticides & Contact Pesticides to Control Cucurbit Insect Pests.

Table 2. Examples of Insecticides for Cucumber, Squash & Melon Pest Control.

3

1 RTU = Ready to Use (pre-mixed spray bottle)

2 RTS = Ready to Spray (hose-end applicator)

If this document didnt answer your questions, please contact HGIC at hgic@clemson.edu or 1-888-656-9988.

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