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Institute of OM Foundation raises more than $2 million to support partnered stimulation practice research – EurekAlert

Posted: April 6, 2022 at 2:21 am

SANTA ROSA, CA (April 4, 2022) In the course of the last four years, the Institute of OM Foundation has raised more than $2million to support rigorous, peer-reviewed scientific research into partnered stimulation and the physiological and psychological effects of Orgasmic Meditation (OM). These ongoing research programs continue to reveal that the practice of OM has promise as a potential treatment for depression, anxiety and trauma.

Among recent varieties of studies funded by the foundation is a project undertaken by Dr. Nicole Prause of UCLA and Dr. Greg Siegle of the University of Pittsburgh that is the very first partnered stimulation enquiry since William H. Masters and Victoria E. Johnsons pioneering research into human sexual response in the 1960s. This study, which included 125 volunteer couples in New York, Los Angeles and San Francisco, found that the practice of OM helps couples increase happiness, amusement, sexual arousal and closeness, while lowering anger and anxiety.Notably, the study found that these benefits were even more pronounced among people who had previously experienced sexual trauma.

My colleagues and I are extremely grateful for the role of The Institute of OM Foundation in supporting this trailblazing research, said Dr. Prause, Ph.D. Prause and Dr. Siegles study was published in the journal Sexual and Relationship Therapy in March of 2021. Ultimately, this research is about exploring the use of sexual stimulation to improve general health, she said.

The Foundation also provided support for a recent study conducted by Dr. Andrew Newberg, research director of the Department of Integrative Medicine and Nutritional Sciences at Thomas Jefferson University in Philadelphia. Dr. Newbergs study used functional magnetic resonance imaging (fMRI) technology to analyze 20 couples as they engaged in OM, and found changes in the frontal, parietal and temporal lobes of the brain among both male and female participants. The study was published in the journalFrontiers in Psychologyon Nov. 11, 2021.

This study suggests the possibility of an important link between sexuality and spirituality, said Dr. Newberg. It should also be emphasized that the findings may have implications for therapeutic applications in the future, helping with various neurological and psychological problems including emotional traumas, sexual dysfunction, and even depression.

In yet another study supported by the Foundation, researchers deployed a questionnaire developed to study mystical experience to determine how the practice of OM might trigger a substantial transcendent sensation in both participating partners, equivalent to a moderate dose of psilocybin, the hallucinogenic compound found in certain types of mushrooms. This study, published in July of 2021 in the journalF1000 Research, employed two different surveys.

The first survey included 780 participants who were asked to complete the questionnaire with a single powerful OM in mind. The second survey included 56 couples, who were asked to complete the survey immediately following an OM session. Respondents to both surveys reportedmoderate mystical experiences.

Given that OM apparently can trigger a mystical experience of similar power to psilocybin, and that psilocybin has shown promise in the treatment of mood and substance disorders, this study raises intriguing questions about whether OM might also be effective in the treatment of these disorders, said Vivian Siegel, Ph.D., the lead author of the study, and currently a lecturer in biology at MIT.

The Institute of OM Foundation is funded by gifts from several generous donors, including Ramani Ayer, a longtime practitioner of transcendental meditation and a retired executive from one of the nations oldest insurance companies.

I saw great changes in people as a result of their regular practice of OM, and I was inspired to support research exploring its potential health and wellness benefits, Ayer said. I have always believed in science, and I am proud to support this research into a promising area where there has not been a great deal of prior research.

In addition to these published studies, the foundation is continuing to support additional scientific research, including an upcoming study exploring the potential impact of OM on dopaminergic function in participants with Parkinsons disease, and a study exploring the impact of OM as a potential aide in the cessation of smoking tobacco.

FOR MORE INFORMATION, PLEASE CONTACT:

Allyson Gonzalez, Institute of OM

Email: Allyson@iomfoundation.org

Phone: 1.888.604.6636

Disclaimer: AAAS and EurekAlert! are not responsible for the accuracy of news releases posted to EurekAlert! by contributing institutions or for the use of any information through the EurekAlert system.

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Breaking the Technical Barriers to NAD+ Supplementation, VIIVA Leads the Global Anti-Aging Revolution with Its Scientific Expertise – Digital Journal

Posted: April 6, 2022 at 2:21 am

Throughout history, humans have been exploring the myth of eternal youth, while anti-aging has become a research topic of eternal interest. As one of the best achievements in emerging anti-aging research, NAD+ (nicotinamide adenine dinucleotide) is highly commercialized and the most well-known.

NAD+ is an essential substance in the human body. It is involved in thousands of redox enzyme reactions. Without it, wed be dead in only a few seconds. However, NAD+ levels drop dramatically with age. By age 40 to 60, at least 50% ofNAD+ is lost, resulting in accelerated aging and various diseases.

Therefore, on the frontiers of scientific research, the primary issue of restoring NAD+ levels has become an important research topic. Scientists are interested in preventing and treatingage-related diseases, as well as the restoration of health and vitality during the aging process.

With nearly 120 years of historical research since 1904, three scientists have won Nobel Prizes for their work on NAD+, and eight Nobel Laureates have publicly supported NAD+.

How to Supplement NAD+, the Nobel Winning Substance

According to conventional understanding, due to its large molecular weight, NAD+ is unstable in the air and difficult to enter the cell membrane, to be completely absorbed. The only way until now had been direct supplementation byintravenous injection, but this method was both invasiveandexpensive (about 5,000 / injection,continuous weekly injection) which made those who want to fight aging flinch.

In this regard, researchers began looking for ways to supplement NAD+ indirectly. For example, NMN and NA supplements became popular.These supplements of NAD+ have been hailed as anti-aging elixirs since their inception. Personalities from Warren Buffett to Li Ka-shing, as well as many big names in the business community,have endorsed them.

Arent there any direct and effective NAD+ supplementsbesides these?

Break the Technical Bottleneck and Make the Impossible Possible

In fact, scientists themselves have been studying effective ways to boost NAD+ levels by taking the supplements orally themselves.

In 2001, a biochemical research team at the University of Genova, Italy, found that connexin cx43 in half channels regulates the transmembrane flux of intact NAD+ by mediating calcium ions. However, these findings were not well received by the medical community. Most medical research was still focused on NAD precursor conversion.

During 2016-2018, the Australian Institute of Integrative Medicine proposed the direction of NAD development in the 21st century, namely, the formulation of optimal NAD+ compound supplements.The optimal NAD+ direct supplement formula can be obtained under the mediation of transmembrane proteins by combining the encapsulated and stable NAD+ molecules with the natural ingredients that can be effectively matched.

In 2018, a precise and complete pathway for NAD+ transmembrane proteinswas again proposed by Italian scientists. Meanwhile, a newly discovered transmembrane protein that can directly transport NAD+ into the mitochondria was also proposed.

At the same time, the VIIVA Global Product and Science Advisory Board began to conduct in-depth research on NAD+ supplementation when studying NMN. As the research progressed, scientists made a new discovery in order to break the technical bottleneck. The goal, of course, was to achieve direct NAD+ supplementation.

In 2020, the VIIVA Global Product and Science Advisory Board, the Australian Collegeof EasternMedicine, and the Australian Institute of Integrative Medicine jointly set out to develop a compound NAD+ that can be directly absorbed and utilized by the human body.

This is a fusion of Eastern and Western wisdom, the concept of homeopathy + the Oriental theory of compatibility-based compound formula, based on Western molecular medicine.Mr. Ashley Dayman, a scientist atthe Australian Collegeof EasternMedicine, has stated,On this basis, we have again made a breakthrough in compatibility research and developed the current optimal formula to upgrade it into an active superfood ingredient, VIIVA NAD+ DIRECT!I believe this will result in an innovative, even revolutionary product that changes the tide in the field of anti-aging!

As shown,these incremental steps in scientific research and technological development are only now beginning to reveal how we can make full use of its bountiful benefits for the sake of humanity.

Subversive Research Findings Start a New Era through Direct Supplementation

The result of VIIVAs latest research, NAD+ DIRECT, uses original DRT technology to innovatively solve the problem of oral NAD+ absorption.

NAD+ Direct was formulated by a team of trained Chinese Medical Doctors following the eternal principles of Traditional Chinese Medicine. The ingredients were chosen on the basis of their energy compatibility with the purpose of increasing the force of Blood and Chi in those people who use them.Western medical science was used to devise and develop a physical product thatcontained a supplement payload enveloped within multiple layers of lipids. The outermost layer is a preparation that is resistant to temperature fluctuations so the product can be stored safely at room temperature.

The second lipid capsule protects its contents against the action of stomach acid and intestinal digestive enzymes. At an ideal position in the small intestine, the second protective covering dissolves and opens to another third lipid layer which facilitates the uptake and transport of the capsule into, and then through the cells lining the intestine and into small blood vessels. Once in the bloodstream, the product, utilizing newly developed cell-penetrating technology, enters the cell with the NAD+ molecule unmodified from the NAD+ molecule which was taken orally.This total manufacturing process is innovative and patentable,because it, theoretically, does something no other supplement preparation can do; namely, allowsoral NAD+ to be conveyed intactly into the cells where it is used.Another ingredient PQQ,enters the cell separately from NAD+ and enhances the recycling of NAD+ in what is called a cytosol salvage pathway. The last major ingredient, Urolithin A, also enters the cell separately and helps with the recycling of mitochondria, the intracellular organelles which produce ATP, the energy of the body.

NAD+ is essential to the production of ATP by the mitochondria.NAD+ Direct is, therefore, a unique product where the Eastern Wisdom of Traditional Chinese Medicine has been integrated with the science of Western Medicine to form a potent NAD+ supplement which has a powerful impact on human health. proudly states chief advisor Dr. Fred Templeman of the VIIVA Global Product and Science Advisory Board.

VIIVA NAD+ DIRECT enables direct NAD+ supplementation through oral intake and directly supplies energy to the mitochondria in order to achieve the optimal balance of NAD+ levels in the human body. VIIVA launched this product to provide consumers with a new anti-aging approach. Considering direct NAD+ supplementation and the unique technology behind it, VIIVA NAD+ DIRECT will be a superior choice among all the other NAD+ supplements!

Media ContactCompany Name: Am-NewsContact Person: JANEEmail: Send EmailCountry: United StatesWebsite: http://www.am-news.com

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AMMC’s New Post Provides Insights on Benefits of Light Therapy On Chronic Pain – Digital Journal

Posted: April 6, 2022 at 2:21 am

Red Light Therapy or RLT as it is called helps skin, muscle tissue, and other parts of the body heal while relieving chronic pain. According to Dr. Delzells latest blog post, the way this works is to expose the body to low levels of infrared light. The light itself isnt visible to the naked eyes, but the heat from it can be felt. Thats why it is often referred to as low-level laser therapy, photobiomodulation, and low-power laser therapy. The therapy helps to promote blood flow and healing which eventually does away with the pain.

One of the benefits of light therapy is its ability to target the source of pain. LEDs or lasers used for this type of therapy are powerful and noninvasive. The lights frequency is adjustable and can be adapted to various areas of the body. The treatment may be more effective if several points along the nerve pathway are treated. Studies have also shown that light therapy reduces TMJ pain and works wonders for patients with back pain.

There are many other benefits to using light therapy for pain management. The infrared (IR) light, for instance, is shown to trigger the release of nitric oxide, the bodys natural vasodilator. The increased oxygen availability for the treated tissues results in less pain. Similarly, the presence of nitric oxide in the body improves immune cells ability to access the affected tissues. These benefits result in a reduction in pain.

It has long been established that Red Light Therapy (RLT) can help heal certain body parts like skin, muscle, and other parts. The therapy mainly works by exposing the affected parts of the body to very low levels of near-infrared light. While the naked eye cant see the light itself, the body feels the heat from the light. IR light treatment is referred to as low-level laser therapy or photobiomodulation. The deeper the light can penetrate, and the more focused, the more energy and blood flow it can lead to, which creates the most heat in the affected body part needed to promote healing in the spot.

While using Red/IR Light Therapy may come across as being simple enough, it does require a professional. A nurse or doctor needs to operate and understand how the treatment works to ensure the best results. That said, regular people can use more generalized light therapies like saunas, light blankets, and lamps.

Readers can read Dr. Patricia Delzells blog detailing the benefits of light therapy in its entirety by visiting the clinics official website at https://www.advancedmmc.com/post/light-therapy-benefits-on-chronic-pain.

Perhaps the most significant benefit of using IR light laser therapy apart from proven pain relief is that there are no adverse effects associated with its use. I have successfully used light therapy for chronic pain for several years and can attest that it can be life-changing when used correctly. However, the first step is to get your pain diagnosed. It is important for us to understand what is causing pain, and then that will tell us if light therapy will be effective in this instance. Said one of the doctors working at AMMC.

She added, We use the best light therapy devices which allows us to treat certain areas, allowing the light to penetrate deep within the soft tissue, which in some cases leads to ongoing pain relief for our patients.

About Advanced Musculoskeletal Medicine Consultants, Inc

Advanced Musculoskeletal Medicine Consultants, Inc (AMMC) is headed by Dr. Patricia Delzell, M.D, who is a world-renowned musculoskeletal ultrasound specialist. In addition, she is a fellowship-trained professional in integrative medicine with expertise in cross-section imaging. Since she is also a board-certified musculoskeletal radiologist, she has many years of experience with integrative treatment and chronic pain.

Advanced Musculoskeletal Medicine Consultants is a leader in integrative pain management with a focus on ultrasound diagnostic solutions, ultrasound-guided treatments of musculoskeletal scars, and therapies to provide relief from chronic musculoskeletal pain.

###

Contact

Dr. Patricia Delzell, MD

Advanced Musculoskeletal Medicine Consultants, Inc.

Address: 8398 Kinsman Road Suite 1 Novelty, OH 44072

Phone: 440-557-5040

Email: [emailprotected]

Website: https://www.advancedmmc.com/

newsroom: news.38digitalmarket.com

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Science-based medicine isn’t just for CAM. The case of ivermectin shows that it never was. – Science Based Medicine

Posted: April 6, 2022 at 2:21 am

A couple of weeks ago, I likened ivermectin to acupuncture. The reason why the comparison came to me is because the reaction of those promoting ivermectin as a highly effective treatmentmiracle cure, evenfor COVID-19 is the approach to evidence. As more and more high-quality evidence from randomized clinical trials has failed to find a therapeutic effect from using ivermectin to treat COVID-19, increasingly its advocates point to positive studies that are less rigorous, such as observational and uncontrolled clinical studies. This is, more or less, exactly what acupuncture advocates have been doing as more and more high-quality studies with appropriate sham acupuncture placebo groups fail to find a detectable benefit for acupuncture for treating anything. Theyve been citing lower quality pragmatic studies, which might not be blinded (much less double-blinded), placebo-controlled, or, in some cases, even randomized. As I explain time and time again, though, citing pragmatic studies is putting the cart before the horse. Pragmatic studies are intended to see how well a treatment thats been shown to work in high quality randomized controlled clinical trials works out in the wild outside of clinical trials and all the rigid protocols and selection criteria, a situation where the indications for the treatment inevitably expand as well. Ivermectin advocates even use the same sorts of excuses, too, when randomized controlled trials (RCTs) fail to show a benefit when ivermectin is used to treat COVID-19, such as claiming that medicine is biased and there is a double standard. (There is a double standard, but it doesnt favor what acupuncture and ivermectin advocates think it does.)

In my post two weeks ago, I briefly mentioned an RCT of ivermectin for COVID-19 that was very much negative, but I didnt discuss it extensively because it had not yet been published and had only been publicized in a news report from The Wall Street Journal. It turns out that last Thursday the study was finally published, in The New England Journal of Medicine, and, as described, it was a resoundingly negative trial, without even a hint of a whiff of efficacy. Was it a perfect trial? Of course not. No trial is. It was, however, large and well-designed and showed zero detectable effect from the early treatment of COVID-19 with ivermectin on hospitalizations and emergency room monitoring. As such, it was just one more drop in the drip-drip-drip of negative RCTs for ivermectin. Along with the drip-drip-drip of evidence that the most famous and largest RCTs of ivermectin for COVID-19 were either incompetently carried out or even fraudulent, and, as I mentioned, ivermectin for COVID-19 is looking increasingly like acupuncture for, well, anything.

So why bring this up again so soon after writing about it? I started thinking (always a dangerous thing) about science-based medicine (SBM) and the very purpose of this blog, and it occurred to me that the case of ivermectin is a very good real-world example of the utility of SBM and why evidence-based medicine (EBM) can fail for so long in a case like that of this particular drug.

Lets go way, way back to the beginning, to explain the differences between EBM and SBM. Then Ill explain how these differences apply. The primary difference is that SBM takes into account prior probability of a treatment working in evaluating clinical evidence.

In the very first post ever on this blog all those years ago, SBM founder Dr. Steven Novella wrote:

All of science describes the same reality, and therefore it must (if it is functioning properly) all be mutually compatible. Collectively, science builds one cumulative model of the natural world. This means we can make rational judgments about what is likely to be true based upon what is already well established. This does not necessarily equate to rejecting new ideas out-of-hand, but rather to adjusting the threshold of evidence required to establish a new claim based upon the prior scientific plausibility of the new claim. Failure to do so leads to conclusions and recommendations that are not reliable, and therefore medical practices that are not reliably safe and effective.

This is why the authors of this blog strongly advocate for science-based medicine the use of the best scientific evidence available, in the light of our cumulative scientific knowledge from all relevant disciplines, in evaluating health claims, practices, and products.

What did Steve mean by prior scientific plausibility? In brief, its an estimate of how likely a proposed treatment, when tested in an RCT or other clinical study, is likely to produce a positive result; i.e., a result consistent with the treatment working for the indication against which it is being tested. More specifically, it is an estimate of the prior probability of a given hypothesis before a study is conducted (in the case of an RCT that the null hypothesis will be rejected and there will be a statistically significant difference between the treatment group and the placebo group, indicating that the treatment works). I realize that this is boiling it down a bit, but I am writing for a lay audience.

It turns out that clinical trials are imperfect and can have a lot of noise even when designed and carried out perfectly. It also turns out that, from a Bayesian perspective, the prior plausibility that a treatment works matters a lot in interpreting clinical trial results; i.e., posterior probability the probability that a positive result is a true positive depends on the prior plausibility. (Ill explain more in the next section what I mean by that.) Of course, in 2008, the original intent of SBM was to look at the evidence for treatments advocated as part of alternative medicine, complementary and alternative medicine (CAM), or, as CAM is now more frequently called, integrative medicine or integrative health, both modalities in which alternative medicine (i.e., quackery) is integrated into conventional EBM. As Ive argued, the newer names for CAM involving integration are nothing more than a rebranding of quackery.

Over the years, weve discussed many examples of alternative medicine with very low prior plausibility. Our favorite, as you might imagine, is homeopathy. The reason is simple. Based on homeopathys Law of Infinitesimals, which states states that the more you dilute a homeopathic remedy, the stronger it gets, we know that most homeopathic remedies are diluted to the point that it is unlikely that a single molecule of the original remedy is left. Homeopathy is thus arguably the purest example of a treatment with zero prior plausibility, given that most homeopathic remedies are is either water or another diluent. After all, as I like to say, for homeopathy to work for any disease or medical condition, several well-established laws of physics and chemistry would have to be not just wrong, but spectacularly wrong. It is, of course, true that there are other alternative medicine treatments that have a similar level of implausibilityimpossibility, reallybased on basic science considerations. (Energy healing comes to mind first.) However, homeopathy is so common and ubiquitous that it makes an excellent teaching example, which is why I use it so often. Also, Ive noticed that a lot of people dont even know what homeopathy is, including medical students and physicians. Many seem to think that homeopathy is just another form of herbal medicine. In any event, because many homeopathy remedies are just water used to make sugar pills, homeopathy is an excellent way to test the noise in clinical trials because its basically testing placebo vs. placebo.

So how does one consider prior plausibility in RCTs?

Weve long discussed the differences between EBM, which uses frequentist statistics, and SBM, which uses Bayesian reasoning that incorporates an estimate of prior plausibility

Ive long complained about methodolatry in EBM, defined as the obscene worship of the RCT as the only valid method of investigation in medicine. Its a term that I first learned in the context of countering misinformation about the H1N1 influenza vaccine back in 2009, taught to me by a senior epidemiologist. Theres a lot of methodolatry in EBM, and its part of the reason why treatments like acupuncture (whose prior plausibility, based on its pre-scientific concepts and mechanism of action is very, very low, albeit probably not zero) keep showing up as potentially workingor at least needing more studyto EBM practitioners. I would also like to take this opportunity right here to quote SBM co-founder and former regular Dr. Kimball Atwood, who discussed why EBM and SBM ought to be synonymous (but currently are not) and, more importantly why EBM is incomplete, and SBM is intended to complete it, or at least to fill in its blind spot. As Dr. Atwood put it, EBM should not be without consideration of prior probability, laws of physics, or plain common sense and SBM and EBM should not only be mutually inclusive, they should be synonymous.

Elsewhere, he argued:

That discussion made the point that EBM favors equivocal clinical trial data over basic science, even if the latter is both firmly established and refutes the clinical claim. It suggested that this failure in calculus is not an indictment of EBMs originators, but rather was an understandable lapse on their part: it never occurred to them, even as recently as 1990, that EBM would soon be asked to judge contests pitting low powered, bias-prone clinical investigations and reviews against facts of nature elucidated by voluminous and rigorous experimentation. Thus although EBM correctly recognizes that basic science is an insufficient basis for determining the safety and effectiveness of a new medical treatment, it overlooks its necessary place in that exercise.

You can see where Im going with this, I hope. In the post from which I drew that quote above, Dr. Atwood explained in more detail what Im talking about in terms of Bayesian theory. It also discusses how an estimate of prior probability affects the posterior probability that a given p-value in a clinical trial indicates a true result, or, as Steven Goodman and Sander Greenland put it in 2007 put it, the prior probability of a hypothesis is its probability before the study, and the posterior probability is its probability after the study.

In fact, I think Ill insert here a table that we at SBM like to cite to illustrate:

Goodman and Greenlands 2007 calculation for posterior probability based on prior probability.

This is Table 2 from the 2007 article by Goodman and Greenland that illustrates how prior probability affects posterior probability for given p-values. Notice one thing. The lower the prior probability, the much lower the posterior probability for a given p-value, such that if a prior probability is estimated to be 1%, then the posterior probability of a result for a standard p-value less than or equal to 0.05 is only 14%, meaning that its only ~14% likely that the result is not a false positive under the conditions specified, which are commonly used conditions in designing RCTs. Even results with fairly low p-values bear serious questioning in the case of a treatment with a very low prior probability/plausibility. (For those of you who are more knowledgeable, the mathematical formulas and reasoning used to derive these numbers are in the reference.)

For something like homeopathy, in which the prior probability based on its scientific impossibility under currently understood science is zero, the situation is, of course, far worse than in the table above. I will also quote Steve Novella and myself from a 2014 paper that we coauthored, in order to address a common criticism of our argument that RCTs of highly improbable/implausible treatments (like homeopathy) are akin to testing whether magic works as medicine:

It should also be noted that biologically plausible does not mean knowing the exact mechanism. What it does mean is that the mechanism should not be so scientifically implausible as to be reasonably considered impossible. In other words, the mechanism should not violate laws and theories in science that rest on far sturdier and longer established foundations than imperfect, bias-prone clinical trials. For example, homeopathy violates multiple laws of physics with its claims that dilution can make a homeopathic remedy stronger and that water can retain the memory of substances with which it has been in contact before [9]. Thus, treatments like homeopathy should be dismissed as ineffective on basic scientific grounds alone. That is why we propose the term science-based medicine (SBM) as opposed to evidence-based medicine (EBM). SBM restores basic science considerations to EBM and is what EBM should be.

Im assuming that most SBM readers accept that, for example, homeopathy or energy healing is so incredibly implausible/improbable from basic science considerations alone that basic science is all that is needed to reject it as a treatment. Im also assuming that most SBM readers will accept that, for example, acupuncture, although not as improbable/implausible as homeopathy, is still incredibly implausible, with a prior probability reasonably estimated as very much less than 1%. (Id say very much less than 0.0001%, even.) Ill also emphasize right here that, while basic science alone can in the cases under discussion here be enough to reject a proposed therapy as so implausible as to be impossible and not worth testing in RCTs, basic science is never enough to demonstrate that a treatment works, no matter how plausible the mechanism and compelling the preclinical data in cell culture and animals. Many are the treatments that appeared highly promising before being tested in humans, only to fail.

But what about ivermectin for COVID-19? That doesnt fall into the same categories as homeopathy or acupuncture, does it? Its an actual drug that is highly effective against diseases caused by roundworm infestations. Its discoverers even won the Nobel Prize for that indication! Is it so implausible that ivermectin might also work against a viral illness like COVID-19? There was even a proposed mechanism for its antiviral activity against SARS-CoV-2, the coronavirus that causes COVID-19. That mechanism was even based on in vitro cell culture studies!

All of these are reasonable considerations. So join me as I discuss them in the last two sections of this post, in which I hope to convince you that the prior probability for ivermectin was always very, very lownot homeopathy-level low, admittedly, but quite low.

So how did the idea come about that ivermectin might be an effective treatment for COVID-19 anyway? You might remember how the idea that repurposing hydroxychloroquine, an anti-malarial drug with immune modulating properties that make it useful as a mild immunosuppressive drug to use to treat autoimmune diseases, took hold early in the pandemic. In brief, Chinese physicians in Wuhan reported in early 2020 that none of a group of 80 patients with lupus erythematosus who were taking hydroxychloroquine went on to catch COVID-19. (Never mind that immunosuppressed patients were exactly the patients most likely to assiduously follow the recommendations of public health authorities during an epidemic.) A number of clinical trials were registered, and, based on anecdotal reports and small clinical trials (nearly all of which are as yet unpublished), in February the Chinese government published an expert consensus recommending CQ or HCQ for patients with COVID-19. Soon after, a number of nations followed suit. In addition, French scientist Didier Raoult started flogging hydroxychloroquine as a cure for COVID-19 and was soon joined by President Donald Trump and of course!Dr. Mehmet Oz. The rest, unfortunately, is history. Even though by late summer 2020, it was becoming quite clear that hydroxychloroquine was ineffective against COVID-19, a conspiracy theory of a suppressed cure had been born.

The idea that ivermectin could be repurposed to treat COVID-19 is similar, but based on even less evidence. I discussed this evidence several months ago, when a conspiracy theory was being spread that Pfizers new antiviral drug Paxlovid was Pfizermectin because both ivermectin and Paxlovid have protease inhibition activity. Ill just recap briefly.

Its been known for years that ivermectin can inhibit coronavirus replication through the inhibition of a protein called /1 importin, something reported a decade ago. This particular protein is involved in the transport of proteins into the nucleus from the cytoplasm. In the case of SARS-CoV-2 infection, the transport of certain proteins into the nucleus is important for completion of its lifecycle. Now heres the thing. Inhibition of this protein complex by ivermectin and preventing the replication of HIV and the Dengue virus requires fairly high concentrations (at least in terms of drug concentrations). The original Australian paper published in May 2020 that examined the ability of ivermectin to inhibit SARS-CoV-2 replication showed similar results, specifically the need for a very high concentration of drug to inhibit the importin that was needed for SARS-CoV-2 replication.

So whats the problem? Its basic pharmacology, as summarized in this review:

As noted, the activity of ivermectin in cell culture has not reproduced in mouse infection models against many of the viruses and has not been clinically proven either, in spite of ivermectin being available globally. This is likely related to the pharmacokinetics and therapeutic safety window for ivermectin. The blood levels of ivermectin at safe therapeutic doses are in the 2080ng/ml range [44], while the activity against SARS-CoV2 in cell culture is in the microgram range. Ivermectin is administered orally or topically. If safe formulations or analogs can be derived that can be administered to achieve therapeutic concentrations, ivermectin could be useful as a broad-spectrum antiviral agent.

Specifically, the IC50 (the concentration that produces 50% of maximal inhibition of a process) was in the 6 M. Given that the molecular weight of ivermectin is 875 g/mol, 6 M translates into ~5.25 mg/L or ~5.25 g/ml, a concentration that is roughly 66-fold higher than the upper end of the range of blood levels of ivermectin safely achievable in a humans bloodstream. Even this paper proposing ivermectin as a treatment for COVID-19 notes this serious problem:

A dose of 12 mg twice daily alone or in combination with other therapy for 57 days has been proposed as a safe therapeutic option for mild, moderate or severe cases of Covid-19 infection.10 The time to reach maximum plasma concentration of 2050 ng/ml, after a dose of 6 or 12 mg, respectively is approximately 4 h.

This is almost certainly the reason that ivermectin doesnt work against COVID-19 in spite of its activity in vitro against SARS-CoV-2. It requires a concentration roughly 66- to 197-fold higher than is safely achievable in the blood. Thats why the review concluded that maybe an ivermectin analogue that is either more active or can achieve a higher concentration safely in the bloodstream is worth investigating. Based on the proposed mechanism in the Australian paper, ivermectin was never a good candidate as a treatment for SARS-CoV-2. As I discussed for the claim that ivermectin should be considered a promising drug for COVID-19 based on its protease inhibitor activity, the situation is just as bad. Again, based on in vitro results, ivermectin was never a promising candidate as an antiviral drug to treat COVID-19.

But how do we translate this into prior probability? In the discussion of the NEJM trial to which I linked above, someone suggested what is probably an accurate assessment:

I think that a pretest probability of much less then 1% is accurate given in vitro results like the experiments that I described. I also noted on Thursday after seeing the NEJM study:

In other words, if ivermectin were to be actually useful against COVID-19, it would almost certainly have to work by a different molecular mechanism than the one described in the in vitro study cited because its known to be impossible to safely achieve ivermectin concentrations in human blood that are sufficient even to inhibit viral replication by 50%or even anywhere near such concentrations. Of course, its always possible that such a previously unknown mechanism was operative, but highly unlikely. Moreover, to consider that such a mechanism might be operative, the clinical trial results would have to be pristine in terms of very compelling results from very well-designed and executed clinical trials, or, as Steve Novella once put it, When the basic science dictates that a proposed treatment is highly implausible, the bar for clinical evidence should be raised proportionately.

This never applied to any clinical trial of ivermectin for COVID-19, not even the seemingly strongly positive ones, and thats even leaving aside the discovered incompetence and likely fraud in the largest positive trials, which led to falsely positive meta-analyses.

As I said, these negative results never surprised those of us with SBM tendencies. Given the very low prior probability that ivermectin is effective against COVID-19 based on in vitro data, even the best positive clinical trials likely had a low posterior probability. Moreover, they werent the only trials. Most trials were equivocal or negative, and, as is the case with acupuncture, the larger and better designed the study, the more likely it was to be negative, which leads me to an adage that I frequently use on Twitter (because its pithy) but have not yet (as far as I can recall) repeated here on SBM:

Very low prior plausibility

+

Equivocal clinical studies

=

Drug doesnt work for the proposed indication

Or at least, any effect observed will be too small and inconsistent to be clinically useful.

Its been a long time since weve discussed the difference between EBM and SBM in quite this much detail, discussions like this having been common here around 2008-2010, but I felt that a discussion like this was overdue. The reason, of course, has been the pandemic and how EBM has treated highly implausible COVID-19 therapies in the same way that its long treated highly implausible CAM therapies, through the lens of methodolatry, in which only RCTs matter for determining if a treatment does or doesnt work and in which even flawed RCTs trump basic scienceexcept that they dont, at least when Bayesian considerations are used.

What makes the discussion of ivermectin interesting to me in this context is that it is an example of why SBM matters in all areas of medicine, not just the consideration of integrative quackery. SBM mavens all immediately realized that, even if you accepted the rationale proposed at face value, ivermectin was incredibly implausible as an effective therapy for COVID-19 just based on the in vitro data alone. Its basic pharmacology. A drug that only inhibits the target protein at a concentration that is at least nearly 70-fold higher than the highest blood concentration of drug that can be safely achieved using standard dosing is incredibly unlikely to be an effective treatment. Its also a general principle that most highly effective drugs inhibit their target at nanomolar or ng/ml concentrations, not micromolar or g/ml concentrations. Candidate drugs that only inhibit their target at such high concentrations, in general, tend to be incredibly unlikely to be useful drugs.

Indeed, any pharmaceutical company that developed a drug just like ivermectin for COVID-19 would have abandoned it after in vitro testing showing that it required such a high concentration to inhibit the intended target. A drug company would have deemed such a candidate compound as not worth pursuing further, except maybe as a base molecule to chemically modify so that it either inhibits the desired target at a much lower concentration or becomes able to achieve much higher blood levels safely. Yet a number of scientists whom I respect were, until very recently, saying that ivermectin probably doesnt work or even saying that there was a strong developing evidence base; that is, until it all fell apart with the determinations that a couple of the largest, most positive studies couldnt possibly have been carried out as reported. Basic pharmacology matters.

I also realize that ivermectin believers wont accept an SBM-based argument against ivermectin any more than believers in acupuncture or homeopathy accept SBM-based Bayesian arguments against their favorite woo. Indeed, in reaction to the NEJM study, there were a lot of reactions like this:

And this:

All of them fell under the sorts of rationales as in this meme, which I most definitely am stealing:

However, remember that EBM arguments dont sway believers in homeopathy or acupuncture, either; so one should not expect that EBM or SBM arguments would sway ivermectin believers. My hope is that SBM thinking will be more likely to sway EBM adherents who dont really take into account prior plausibility in evaluating RCT evidence and therefore take much longer to reach a conclusion that is obvious to SBM about a treatment, in the case of ivermectin that it doesnt work against COVID-19. Indeed, at this stage I would argue that it is unethical to begin another RCT of ivermectin to treat COVID-19. Given how resoundingly negative the evidence is now, such a trial would be all risk with no realistic potential for any patient to benefit. Im not even sure whether its ethical to continue to recruit patients to RCTs of ivermectin still enrolling.

In future talks about the differences between SBM and EBM and how EBM should be (but still is not) synonymous with SBM, I plan on adding the example of ivermectin for COVID-19 to my long-used examples of homeopathy and acupuncture when I discuss Bayesian thinking and prior probability/plausibility because SBM isnt just for CAM any more. It never was, and never should have been. If Ive been guilty of not applying it to conventional medicine as much as I do to CAM, the case of ivermectin has shown me the error of my ways.

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Penn researchers discover new cell type in human lung with regenerative properties – EurekAlert

Posted: April 6, 2022 at 2:20 am

image:Human ES cell derived RASC (respiratory airway secretory cell transitioning to an Alveolar type 2 cell over time in culture view more

Credit: Penn Medicine

PHILADELPHIA A new type of cell that resides deep within human lungs and may play a key role in human lung diseases has been discovered by researchers at the Perelman School of Medicine at the University of Pennsylvania.

The researchers, who report their findings today in Nature, analyzed human lung tissue to identify the new cells, which they call respiratory airway secretory cells (RASCs). The cells line tiny airway branches, deep in the lungs, near the alveoli structures where oxygen is exchanged for carbon dioxide. The scientists showed that RASCs have stem-cell-like properties enabling them to regenerate other cells that are essential for the normal functioning of alveoli. They also found evidence that cigarette smoking and the common smoking-related ailment called chronic obstructive pulmonary disease (COPD) can disrupt the regenerative functions of RASCshinting that correcting this disruption could be a good way to treat COPD.

COPD is a devastating and common disease, yet we really dont understand the cellular biology of why or how some patients develop it. Identifying new cell types, in particular new progenitor cells, that are injured in COPD could really accelerate the development of new treatments, said study first author Maria Basil, MD, PhD, an instructor of Pulmonary Medicine.

COPD typically features progressive damage to and loss of alveoli, exacerbated by chronic inflammation. It is estimated to affect approximately 10 percent of people in some parts of the United States and causes about 3 million deaths every year around the world. Patients often are prescribed steroid anti-inflammatory drugs and/or oxygen therapy, but these treatments can only slow the disease process rather than stop or reverse it. Progress in understanding COPD has been gradual in part because micethe standard lab animalhave lungs that lack key features of human lungs.

In the new study, Morrisey and his team uncovered evidence of RASCs while examining gene-activity signatures of lung cells sampled from healthy human donors. They soon recognized that RASCs, which dont exist in mouse lungs, are secretory cells that reside near alveoli and produce proteins needed for the fluid lining of the airway.

With studies like this were starting to get a sense, at the cell-biology level, of what is really happening in this very prevalent disease, said senior author Edward Morrisey, PhD, the Robinette Foundation Professor of Medicine, a professor of Cell and Developmental Biology, and director of the Penn-CHOP Lung Biology Institute at Penn Medicine.

Observations of gene-activity similarities between RASCs and an important progenitor cell in alveoli called AT2 cells led the team to a further discovery: RASCs, in addition to their secretory function, serve as predecessors for AT2 cellsregenerating them to maintain the AT2 population and keep alveoli healthy.

AT2 cells are known to become abnormal in COPD and other lung diseases, and the researchers found evidence that defects in RASCs might be an upstream cause of those abnormalities. In lung tissue from people with COPD, as well as from people without COPD who have a history of smoking, they observed many AT2 cells that were altered in a way that hinted at a faulty RASC-to-AT2 transformation.

More research is needed, Morrisey said, but the findings point to the possibility of future COPD treatments that work by restoring the normal RASC-to-AT2 differentiation processor even by replenishing the normal RASC population in damaged lungs.

The research was supported by the National Institutes of Health (HL148857, HL087825, HL134745, HL132999, 5T32HL007586-35, 5R03HL135227-02, K23 HL121406, K08 HL150226, DK047967, HL152960, R35HL135816, P30DK072482, U01HL152978), the BREATH Consortium/Longfunds of the Netherlands, the Parker B. Francis Foundation, and GlaxoSmithKline.

###

Penn Medicineis one of the worlds leading academic medical centers, dedicated to the related missions of medical education, biomedical research, and excellence in patient care. Penn Medicine consists of theRaymond and Ruth Perelman School of Medicine at the University of Pennsylvania (founded in 1765 as the nations first medical school) and theUniversity of Pennsylvania Health System, which together form a $8.9 billion enterprise.

The Perelman School of Medicine has been ranked among the top medical schools in the United States for more than 20 years, according toU.S. News & World Report's survey of research-oriented medical schools. The School is consistently among the nation's top recipients of funding from the National Institutes of Health, with $496 million awarded in the 2020 fiscal year.

The University of Pennsylvania Health Systems patient care facilities include: the Hospital of the University of Pennsylvania and Penn Presbyterian Medical Centerwhich are recognized as one of the nations top Honor Roll hospitals byU.S. News & World ReportChester County Hospital; Lancaster General Health; Penn Medicine Princeton Health; and Pennsylvania Hospital, the nations first hospital, founded in 1751. Additional facilities and enterprises include Good Shepherd Penn Partners, Penn Medicine at Home, Lancaster Behavioral Health Hospital, and Princeton House Behavioral Health, among others.

Penn Medicine is powered by a talented and dedicated workforce of more than 44,000 people. The organization also has alliances with top community health systems across both Southeastern Pennsylvania and Southern New Jersey, creating more options for patients no matter where they live.

Penn Medicine is committed to improving lives and health through a variety of community-based programs and activities. In fiscal year 2020, Penn Medicine provided more than $563 million to benefit our community.

Cells

Human distal airways contain a multipotent secretory cell that can regenerate alveoli

30-Mar-2022

Disclaimer: AAAS and EurekAlert! are not responsible for the accuracy of news releases posted to EurekAlert! by contributing institutions or for the use of any information through the EurekAlert system.

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Nano Products Online Store | Nanoproducts, Nanoparticles …

Posted: April 6, 2022 at 2:12 am

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Margaret McGovern, MD, PhD, Appointed YSM Deputy Dean and CEO of Yale Medicine – Yale School of Medicine

Posted: April 6, 2022 at 2:09 am

Margaret McGovern, MD, PhD, has been appointed deputy dean for clinical affairs at Yale School of Medicine and chief executive officer of Yale Medicine, effective July 1, 2022.

McGovern is currently Knapp Professor of Pediatrics and dean for clinical affairs at Renaissance School of Medicine at Stony Brook University and vice president of Stony Brook Medicine (SBM) Health System clinical programs and strategy. Prior to assuming these roles in 2018, she was chair of Pediatrics and physician-in-chief at Stony Brook Childrens Hospital. She led the development and planning of Stony Brook Childrens Hospital and markedly expanded its pediatric clinical research and education programs. McGovern also led the Stony Brook faculty practice plan for six years during her tenure as chair of Pediatrics. In 2019, she led the formation of the SBM Clinically Integrated Network, which is engaged in delivering high-quality, high value care by building a population health platform. She serves as the physician executive leader for the initiative.

She received her PhD in genetics from the Mount Sinai Graduate School of Biomedical Sciences and her MD from Mount Sinai School of Medicine (now called Icahn School of Medicine at Mount Sinai). She completed her residency training in pediatrics and fellowships in clinical and molecular genetics at Mount Sinai Hospital before joining the faculty. At Icahn, she was vice chair of the Department of Genetics and Molecular Medicine and professor of human genetics, and of oncological sciences and obstetrics and gynecology. She was the program director for the NIH-funded General Clinical Research Center (GCRC) and carried out CDC- and NIH-funded research focused primarily on the integration of molecular genetic diagnostic testing into clinical practice and inborn errors of metabolism. She is considered a world authority on sphingolipidoses.

At Yale, McGovern will play an essential role in the development of clinical strategy for the School of Medicine at an important juncture in the relationship between YSM and Yale New Haven Health System. She will provide strategic counsel and otherwise work to realize YSMs vision for its clinical enterprise. As CEO of YM, she will participate actively in the senior leadership group of the medical schools academic health system and play a key role in setting and realizing strategic goals. As deputy dean for clinical affairs, she will serve as the physician leader who represents the clinical mission of the School of Medicine in all venues. In this role, she will work closely with the clinical chairs in the recruitment of clinical faculty, mentor the next generation of clinical leaders, and collaborate with the deputy deans of research and education to balance the needs for enhancing the academic and educational missions of YSM with clinical ambulatory operational efficiencies, quality improvement, and sound clinical finances.

Submitted by Robert Forman on April 05, 2022

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Uncovering a cooperation between RNA decay and chromatin regulating complexes that keep transposable element RNAs under control – EurekAlert

Posted: April 6, 2022 at 2:09 am

image:The HUSH and NEXT complexes function to control expression of TE transcripts at either the transcriptional or post-transcriptional level, respectively. HUSH is recruited to TE loci decorated with H3K9me3 histone marks and is required for transcriptional (txn) suppression. NEXT is recruited to HUSH-bound loci through a physical connection that requires ZCCHC8 and MPP8 and functions to decay pA- RNAs produced at TE loci view more

Credit: William Garland, Aarhus University

Mammalian genomes have been colonised by transposable elements (TEs), so called genetic parasites, which occupy ~ 50% of genomic DNA and harbour the potential to propagate, resulting in genetic instability. These elements are therefore subjected to tight cellular control. Whilst our understanding of TE regulation has been dominated by transcriptional and epigenetic models, the role of post-transcriptional RNA decay regulation has until now been unexplored.

A Danish team has identified a connection between the mouse orthologous nuclear exosome targeting (NEXT) and the human silencing hub (HUSH) complexes, involved in nuclear RNA decay and epigenetic silencing of TEs respectively. The researchers show that NEXT globally supresses TE RNA levels in mouse embryonic stem (ES) cells, and that this is aided by a recruitment to TE loci via the HUSH complex. This reveals an unprecedented collaborative mechanism of transcriptional and post-transcriptional control to limit the genotoxic activity of TE RNAs.

Previously, the Torben Heick Jensen laboratory identified and characterised the NEXT complex that target non-adenylated (pA-) RNAs to the nuclear exosome complex for decay. Upon depletion of NEXT, cells stabilise and accumulate such RNAs, but a putative role of NEXT in the regulation of TE RNAs had remained unexplored.

To investigate this, the NEXT component ZCCHC8 was knocked out (KO) in ES cells using CRISPR/Cas9 followed by high-throughput RNA sequencing and a focussed analysis of TE RNAs. Interestingly, this showed that TE RNAs were stabilised in NEXT KO conditions.

Upon further examination, it was shown that NEXT physically interact with HUSH via ZCCHC8 and that this connection provides a method of recruitment to target NEXT to DNA to degrade pA- TE RNAs whilst HUSH functions to regulate pA+ TE RNAs. This combinatorial mechanism ensures that TEs remain restricted by the collaborative functions of NEXT and HUSH.

These findings are a result of a collaborative project between the laboratories of Torben Heick Jensen at the Department of Molecular Biology and Genetics, Aarhus University, Kristian Helin at the Center for Epigenetics, Memorial Sloan Kettering Cancer Center and Albin Sandelin at the Biotech Relearch and Innovation Centre (BRIC), Copenhagen University. The studies were spearheaded by postdoc Will Garland from Aarhus University.

This study was published in the internationally recognised journalMolecular Cell.

Chromatin modifier HUSH co-operates with RNA decay factor NEXT to restrict transposable element expression.William Garland, Iris Mller, Mengjun Wu, Manfred Schmid, Katsutoshi Imamura, Leonor Rib, Albin Sandelin, Kristian Helin and Torben Heick Jensen.Molecular Cell(2022) doi:10.1016/j.molcel.2022.03.004.

Assistant ProfessorWill Garland-garland@mbg.au.dkProfessorTorben Heick Jensen-thj@mbg.au.dkDepartment of Molecular Biology and Genetics, Aarhus University, Denmark

Experimental study

Cells

Chromatin modifier HUSH co-operates with RNA decay factor NEXT to restrict transposable element expression

28-Mar-2022

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Mutations in Noncoding DNA Are Found to Protect the Brain From ALS – Neuroscience News

Posted: April 6, 2022 at 2:09 am

Summary: Mutations in the IL18RAP gene reduce inflammation and appear to protect the brain against ALS.

Source: Weizmann Institute of Science

Genetic mutations linked to a disease often spell bad news. Mutations in over 25 genes, for example, are associated with amyotrophic lateral sclerosis, or ALS, and they all increase the risk of developing this incurable disorder.

Now, a research team headed by Prof. Eran Hornstein of the Weizmann Institute of Science has linked a new gene to ALS, but this one contains mutations of a different sort: They seem to play a defensive rather than an offensive role in the disease.

The gene newly linked to ALS is located in the part of our genome once called junk DNA. This DNA makes up over 97 percent of the genome, but because it does not encode proteins, it used to be considered junk.

Today, though this noncoding DNA is still regarded as biological dark matter, its already known to serve as a crucial instruction manual. Among other things, it determines whengeneswithin the coding DNAthe ones that do encode proteinsare turned on and off.

Hornsteins lab in Weizmanns Molecular Neuroscience and Molecular Genetics Departments studies neurodegenerative diseasesthat is, diseases in which neurons degenerate and die. The team is focusing on our noncoding DNA.

This massive, noncoding part of the genome has been overlooked in the search for the genetic origins of neurodegenerative diseases like ALS, Hornstein explains.

This is despite the fact that for most ALS cases, proteins cannot explain the emergence of the disease.

Many people know about ALS thanks to the Ice Bucket Challenge that went viral a few years ago. This rare neurological disease attacks motor neurons, the nerve cells responsible for controlling voluntary muscle movement involved in everything from walking to talking and breathing.

The neurons gradually die off, ultimately causing respiratory failure and death. One of the symptoms of ALS is inflammation in the brain regions connected to the dying neurons, caused by immune mechanisms in the brain.

Our brain has an immune system, explains Dr. Chen Eitan, who led the study in Hornsteins lab together with Aviad Siany. If you have a degenerative disease, your brains immune cells, calledmicroglia, will try to protect you, attacking the cause of the neurodegeneration.

The problem is that in ALS, the neurodegeneration becomes so severe that the chronic microglial activation in the brain rises to extremely high levels, turning toxic. The immune system thus ends up causing damage to thebrainit set out to protect, leading to the death of more motor neurons.

Thats where the new findings, published today inNature Neuroscience, come in. The Weizmann scientists focused on a gene called IL18RAP, long known to affect microglia, and found that it can contain mutations that mitigate the microglias toxic effects. We have identified mutations in this gene that reduce inflammation, Eitan says.

After analyzing the genomes of more than 6,000 ALS patients and of more than 70,000 people who do not have ALS, the researchers concluded that the newly identified mutations reduce the risk of developing ALS nearly fivefold.

It is therefore extremely rare for ALS patients to have these protective mutations, and those rare patients who do harbor them tend to develop the disease roughly six years later, on average, than those without the mutations. In other words, the mutations seem to be linked to a core ALS process, slowing the disease down.

To confirm the findings, the researchers used gene-editing technology to introduce the protective mutations into stem cells from patients with ALS, causing these cells to mature into microglia in a laboratory dish.

They then cultured microglia, with or without the protective mutations, in the same dishes with motor neurons. Microglia harboring the protective mutations were found to be less aggressive towardmotor neuronsthan microglia that did not have themutations.

Motor neurons survived significantly longer when cultured with protective microglia, rather than with regular ones, Siany says.

Eitan notes that the findings have potential implications for ALS research and beyond. Weve found a new neuroprotective pathway, she says.

Future studies can check whether modulating this pathway may have a positive effect on patients. On a more general level, our findings indicate that scientists should not ignore noncoding regions of DNAnot just in ALS research, but in studying other diseases with a genetic component as well.

Author: Press OfficeSource: Weizmann Institute of ScienceContact: Press Office Weizmann Institute of ScienceImage: The image is in the public domain

Original Research: Closed access.Whole-genome sequencing reveals that variants in the Interleukin 18 Receptor Accessory Protein 3UTR protect against ALS by Chen Eitan et al. Nature Neuroscience

Abstract

Whole-genome sequencing reveals that variants in the Interleukin 18 Receptor Accessory Protein 3UTR protect against ALS

The noncoding genome is substantially larger than the protein-coding genome but has been largely unexplored by genetic association studies.

Here, we performed region-based rare variant association analysis of >25,000 variants in untranslated regions of 6,139 amyotrophic lateral sclerosis (ALS) whole genomes and the whole genomes of 70,403 non-ALS controls.

We identified interleukin-18 receptor accessory protein (IL18RAP) 3 untranslated region (3UTR) variants as significantly enriched in non-ALS genomes and associated with a fivefold reduced risk of developing ALS, and this was replicated in an independent cohort. These variants in theIL18RAP3UTR reduce mRNA stability and the binding of double-stranded RNA (dsRNA)-binding proteins.

Finally, the variants of theIL18RAP3UTR confer a survival advantage for motor neurons because they dampen neurotoxicity of human induced pluripotent stem cell (iPSC)-derived microglia bearing an ALS-associated expansion inC9orf72, and this depends on NF-B signaling.

This study reveals genetic variants that protect against ALS by reducing neuroinflammation and emphasizes the importance of noncoding genetic association studies.

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Alzheimers Disease: The Identification of 75 Genetic Risk Factors Brings New Insights – Neuroscience News

Posted: April 6, 2022 at 2:09 am

Summary: Researchers have identified 75 regions of the genome associated with Alzheimers disease, including 42 novel regions. The findings shed new light on the biological mechanisms of Alzheimers and provide a new avenue for the treatment of this neurodegenerative disorder.

Source: INSERM

Identifying genetic risk factors for Alzheimers disease is essential if we are to improve our understanding and treatment of it. Progress in human genome analysis along with genome-wide association studies [1]are now leading to major advances in the field.

Researchers in Europe, the US and Australia have identified 75regions of the genome that are associated with Alzheimers disease. Forty-two of these regions are novel, meaning that they have never before been implicated in the disease.

The findings, published inNature Genetics, bring new knowledge of the biological mechanisms at play and open up new avenues for treatment and diagnosis.

Alzheimers disease is the most common form of dementia, affecting around 1,200,000 people in France. This complex, multifactorial disease, which usually develops after the age of 65, has a strong genetic component. The majority of cases are thought to be caused by the interaction of different genetic predisposition factors with environmental factors.

Although our understanding of the disease continues to improve, there is no cure at this time. The medications available are mainly aimed at slowing cognitive decline and reducing certain behavioral disorders.

In order to better understand the origins of the disease, one of the major challenges of research is to better characterize its genetic risk factors by identifying the pathophysiological processes at play [2], and thereby propose novel therapeutic targets.

As part of an international collaboration, researchers from Inserm, Institut Pasteur de Lille, Lille University Hospital and Universit de Lille conducted a genome-wide association study (GWAS) on the largest Alzheimers patient group set up until now [3], under the coordination of Inserm Research Director Jean-Charles Lambert.

Encouraged by advances in genome analysis, these studies consist of analyzing the entire genome of tens of thousands or hundreds of thousands of individuals, whether healthy or sick, with the aim of identifying genetic risk factors associated with specific aspects of the disease.

Using this method, the scientists were able to identify 75regions (loci) of the genome associated with Alzheimers, 42of which had never previously been implicated in the disease.

Following this major discovery, we characterized these regions in order to give them meaning in relation to our clinical and biological knowledge, and thereby gain a better understanding of the cellular mechanisms and pathological processes at play, explains Lambert.

Highlighting pathological phenomena

In Alzheimers disease, two pathological brain phenomena are already well documented: namely, the accumulation of amyloid-beta peptides and the modification of the protein Tau, aggregates of which are found in the neurons.

Here, the scientists confirmed the importance of these pathological processes. Their analyses of the various genome regions confirm that some are implicated in amyloid peptide production and Tau protein function.

Furthermore, these analyses also reveal that a dysfunction of innate immunity and of the action of the microglia (immune cells present in the central nervous system that play a trash collector role by eliminating toxic substances) is at play in Alzheimers disease.

Finally, this study shows for the first time that the tumor necrosis factor alpha (TNF-alpha)-dependent signaling pathway is involved in disease [4].

These findings confirm and add to our knowledge of the pathological processes involved in the disease and open up new avenues for therapeutic research. For example, they confirm the utility of the following: the conduct of clinical trials of therapies targeting the amyloid precursor protein, the continuation of microglial cell research that was initiated a few years ago, and the targeting of the TNF-alpha signaling pathway.

Risk score

Based on their findings, the researchers also devised a genetic risk score in order to better evaluate which patients with cognitive impairment will, within three years of its clinical manifestation, go on to develop Alzheimers disease.

While this tool is not at all intended for use in clinical practice at present, it could be very useful when setting up therapeutic trials in order to categorize participants according to their risk and improve the evaluation of the medications being tested,explains Lambert.

In order to validate and expand their findings, the team would now like to continue its research in an even broader group. Beyond this exhaustive characterization of the genetic factors of Alzheimers disease, the team is also developing numerous cellular and molecular biology approaches to determine their roles in its development.

Furthermore, with the genetic research having been conducted primarily on Caucasian populations, one of the considerations for the future will be to carry out the same type of studies in other groups in order to determine whether the risk factors are the same from one population to the next, which would reinforce their importance in the pathophysiological process.

Notes

[1]These studies consist of analyzing the entire genome of thousands or tens of thousands of people, whether healthy or sick, to identify genetic risk factors associated with specific aspects of the disease.

[2]All functional problems caused by a particular disease or condition.

[3]Here, the researchers were interested in the genetic data of 111,326 people who were diagnosed with Alzheimers disease or had close relatives with the condition, and 677,663 healthy controls. These data are derived from several large European cohorts grouped within the EuropeanAlzheimer & DementiaBioBank(EADB) consortium.

[4] Tumor necrosis factor alpha is a cytokine: an immune system protein implicated in the inflammation cascade, particularly in tissue lesion mechanisms.

Author: Priscille RiviereSource: INSERMContact: Priscille Riviere INSERMImage: The image is in the public domain

Original Research: Open access.New insights into the genetic etiology of Alzheimers disease and related Dementias by Jean-Charles Lambert et al. Nature Genetics

Abstract

New insights into the genetic etiology of Alzheimers disease and related Dementias

Characterization of the genetic landscape of Alzheimers disease (AD) and related dementias (ADD) provides a unique opportunity for a better understanding of the associated pathophysiological processes.

We performed a two-stage genome-wide association study totaling 111,326 clinically diagnosed/proxy AD cases and 677,663 controls.

We found 75 risk loci, of which 42 were new at the time of analysis. Pathway enrichment analyses confirmed the involvement of amyloid/tau pathways and highlighted microglia implication.

Gene prioritization in the new loci identified 31 genes that were suggestive of new genetically associated processes, including the tumor necrosis factor alpha pathway through the linear ubiquitin chain assembly complex.

We also built a new genetic risk score associated with the risk of future AD/dementia or progression from mild cognitive impairment to AD/dementia.

The improvement in prediction led to a 1.6- to 1.9-fold increase in AD risk from the lowest to the highest decile, in addition to effects of age and theAPOE4 allele.

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