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A cell therapy to heal a broken heart – Drug Discovery News

Posted: June 14, 2024 at 2:42 am

For many people, surviving a heart attack is just the beginning. Within minutes after one or more areas of the heart stop receiving oxygen, cardiac muscle cells begin to die. Given the limited regeneration potential of the heart, its response to this destruction is to replace the lost cells with scar tissue.

Matthieu de Kalbermatten, CEO of CellProthera, said that their product, ProtheraCytes, mimics one of the natural responses of the body after heart attack by mobilizing progenitor blood CD34+ stem cells towards the cardiac tissue.

Credit: Studio Chlorophylle

This scar is just there to save the patient, said Matthieu de Kalbermatten, chief executive officer of the biotechnological company CellProthera. The heart wont pump blood as efficiently as before, and if the damage is severe, it can result in chronic heart failure. The [organ] becomes weaker and weaker, [leading to] a high mortality after three to five years, plus bad quality of life, he explained.

Drugs and therapies prescribed after a heart attack may improve patient survival rates, but they do not repair the injured cardiac tissue, said de Kalbermatten. His team at CellProthera aims to prevent this long-term damage by injecting patients with their own, lab-expanded, stem cells.

The promise of this cell therapy, called ProtheraCytes, is to intervene early within a month after the heart attack and inject these cells in the hope that they will help regenerate the tissue, reducing the scar area and regaining partial heart function.

The researchers at CellProthera focus their efforts on the regenerative potential of CD34+ stem cells, which give rise to all types of blood cells in the body as well as the endothelial cells that line the insides of blood vessels. Since the early 2000s, studies have shown that CD34+ cells mobilize from the bone marrow into peripheral blood circulation shortly after a heart attack (1,2). These observations suggest that the human body naturally calls for these cells to come and help after such an event, but de Kalbermatten hypothesized that the migration might not be sufficient to heal after a severe heart attack. With Protheracytes, he said, We are trying to mimic [this] natural phenomenon, but just making it bigger and stronger.

To achieve this goal, the team first obtains CD34+ cells from the patient a few weeks to a month after the heart attack. After administering a growth factor to the patient to stimulate the bone marrows production of these cells, doctors take a blood draw from the patient and isolate the CD34+ cells. The team use their own cell expansion protocol and technology for in vitro proliferation to increase the number of these cells. Finally, nine days after the blood draw, there is a CD34+ suspension ready to be injected back into the patient, de Kalbermatten said. The cells are maintained fresh during that period. He noted, We dont freeze them. Keeping the cells fresh allows for higher cell viability and potency, he explained.

A doctor then injects the stem cell suspension via a catheter directly into the left ventricle muscle wall of the patient. CellProthera partnered with the biotech company BioCardia, which designed a specialized catheter known as the Helix Transendocardial Biotherapeutic Delivery System. The goal was to deliver therapeutic agents cells, genes, or proteins directly into the heart muscle to offer better results than injecting them into the coronary arteries, while also avoiding cardiac surgery, explained Peter Altman, chief executive officer of BioCardia.

Injecting them into the myocardium as opposed to just sending them down the capillaries [might be] better, concurred Robb MacLellan, a practicing cardiologist and physician scientist studying regenerative therapies at the University of Washington who is not associated with CellProthera or BioCardia. With gene therapy, doing that leads to better delivery amounts.

Using a patients own cells for transplant comes with advantages and disadvantages. The alternative option, an allogeneic transplant, might be more efficient since the production of cells does not rely on the patient, and cell quantities may be less limited. Yet, using foreign cells poses rejection risks.

We are trying to mimic [this] natural phenomenon, but just making it bigger and stronger. - Matthieu de Kalbermatten, CellProthera

Autologous transplantation, on the other hand, is very safe, de Kalbermatten said. Since cells are from the patient, rejection is unlikely, and there is no need for immunosuppressive drugs. However, using the patients own cells has other requirements, such as a well-designed logistic bench-to-bedside process. We have developed a technology that is totally automated, he said. You take a kit; you take the blood; you put it in the machine; you get a product. That standardization also reduces costs, he added.

The benefits from the therapy do not rely on the stem cells differentiating into cardiomyocytes, but the secretion of factors makes the difference. The release of these factors may modulate endogenous repair processes (3). Its the beauty about the cell as a drug, because the cell is a small factory that is able to react to the environment, de Kalbermatten said.

This idea that cells can impact scar formation and scar resolution has been around for decades ... in cardiology, said MacLellan. Yet, he noted that while researchers have tried to use cell therapies to modulate the healing process post injury in the heart and other organs, none of them have translated into standard of care.

Translating preclinical studies of stem cell therapies to successful clinical trials to treat acute myocardial infarction has proved challenging. One reason for this is the lack of rigor and standardized protocols in many preclinical studies (4).

The various drugs beta blockers, angiotensin-converting enzyme (ACE) inhibitors, aspirin administered to patients after a heart attack may also account for this difference, said MacLellan. If you get on that cocktail of medicines, your prognosis is then very good, he said. That has really frustrated these cell therapy trials, he added. [Most] preclinical trials never use the same medication background that we use in patients. Researchers need to prove that cell therapies add to these existing therapies, and thats a high bar, he added.

Differences in the delivery methods between animal and human cell therapy protocols may also explain the inconsistencies between preclinical and clinical outcomes for acute myocardial infarction. Researchers often deliver the cells surgically into the heart muscle in small animal models, while for humans, they mostly use catheters that go into the coronary arteries. Using the BioCardia Helix catheter may help bring cell therapies in humans closer to achieving the positive results reported in preclinical studies, according to Altman.

Once the stem cell suspension is ready, scientists at CellProthera ship it from the manufacturing site to the clinical site where doctors prepare the patient for the cell injection.

Credit: CellProthera

In addition to the delivery system, MacLellan acknowledged that ProtheraCytes has two more primary differences that stand out from what researchers have previously done, namely, the process for obtaining and expanding the CD34+ cells and the timing of the infusion.

CellProthera is currently conducting a clinical trial to reveal whether these variations in their protocol result in more successful clinical translation than previous attempts. Already in the 2000s, the founder of CellProthera, Philippe Henon, led a pilot study on seven patients who had suffered a severe heart attack. That first trial was nonrandomized, and the surgeons injected the cells directly into the cardiac tissue by open heart surgery, explained de Kalbermatten. The outcome for six of the patients was promising. Thats why we decided to start this adventure.

Now, the teams Phase 1/2b randomized clinical trial evaluates the safety and efficacy of their therapy in 33 patients. For assessing the efficacy, they use primarily magnetic resonance imaging (MRI). This is the most precise imaging system that you can have these days, said de Kalbermatten. They compare, for instance, visible damage after the heart attack versus six months after injection of ProtheraCytes. The aim is to determine whether the therapy reduces the area in the heart that became nonviable after the heart attack. The interim data based on this parameter is already very compelling, said de Kalbermatten. The team also measures other markers that are predictive of the future outcome of the disease, he added.

Completing this assessment will provide enough information to potentially advance to the next stage and design a Phase 3 trial. In this study, they plan to assess survival rate and hospitalization for worsening heart failure.

There is a lot of history to overcome in this field, MacLellan said, but he is optimistic about the future. The scientific community may be emerging from the period of disappointment regarding cell therapies, he suggested, and well-designed randomized controlled trials will add important information about their value.

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Efficient bone marrow irradiation and low uptake by non-haematological organs with an yttrium-90-anti-CD66 antibody … – Nature.com

Posted: June 14, 2024 at 2:42 am

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Efficient bone marrow irradiation and low uptake by non-haematological organs with an yttrium-90-anti-CD66 antibody ... - Nature.com

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Q&A: New Frontiers in ALS Research – Newswise

Posted: June 14, 2024 at 2:42 am

Newswise LOS ANGELES (June 12, 2024) --Clive Svendsen, PhD, executive director of theBoard of Governors Regenerative Medicine Instituteand professor of Medicine and Biomedical Sciences at Cedars-Sinai, is developing new treatments and models for amyotrophic lateral sclerosis (ALS) using stem cells.

ALS progressively destroys nerve cells in the brain and spinal cord, causing people to lose muscle movement required for walking, talking, swallowing and breathing. Currently, the disease is irreversible and has no cure, but a potential therapy that combines gene and stem cell technologies is progressing well, according to Svendsen.

Svendsen has been selected as an inaugural recipient of a grant from the Tambourine ALS Breakthrough Research Fund, funded by Tambourine and administered in partnership with the Milken Institute. The grant will fund research that combines advanced stem cell modeling with artificial intelligence to learn more about the cause of ALS. Svendsen sat down with theCedars-Sinai Newsroomto discuss his ALS research and new projects that the grant will help fund.

It uses a protein called GDNF (glial cell line-derived neurotrophic factor), which is a nutrient that brain cells can use to mature and survive. It promotes the growth of axons, the threadlike structures brain cells use to communicate, and also helps damaged cells rejuvenate.

In ALS, motor neurons are dying. And there is evidence that GDNF can help protect them. The problem is that GDNF is a large protein and it cannot pass through the barrier that protects the brain by preventing potentially harmful substances from entering it.

We've developed a clever technique, like a Trojan horse. We've engineered a human stem cell called a neural progenitor to release GDNF, and we're transplanting those cells into the spinal cords and brains of patients with ALS. The idea is that the progenitor cells mature into healthy support cells and release GDNF that will help heal diseased motor neurons.

Our first trials are to ensure the therapy is safe for patients. We have completed a Phase I/IIa clinical trial to treat the lower motor neuron, which controls leg movement, in 18 patients with ALS. We had good safety data in every one of those patients.Thoseresultswere published inNature Medicine.

We only put the cells on one side of each patients spinal cord, so we could compare the treated leg to the nontreated leg. While the focus of this initial study was safety, we did see a trend toward improvement in the treated limb after 12 months, even though the patients were at an advanced disease stage. We plan to perform an additional trial with patients who are earlier in the disease process and with optimized cell targeting, and hope to significantly improve limb function.

As the upper motor neuron in the brain is also affected in ALS, weve started an additional safety trial where we will treat the upper motor neurons, specifically those that control hand movement. We've treated five patients andthe trial is still open. Our next step will be to treat both the upper and lower motor neurons, and at that point, we will also measure the effectiveness of the therapy. If our technique is working, we should see a slowing of disease progression in the treated hand and leg. Research Project Advisor Pablo Avalos, MD; Adam Mamelak, MD, director of the Functional Neurosurgery Program at Cedars-Sinai; and Richard Lewis, MD, director of the Electromyography Laboratory at Cedars-Sinai, are key contributors to this work.

With the help of theCedars-Sinai Biomanufacturing Center, as part of a large consortium calledAnswer ALS, we have generated induced pluripotent stem cells from 1,000 patients with ALS. We have full clinical records and genomic sequencing for these patients. Induced pluripotent stem cells are adult human cells taken back in time to a stage where they are capable of developing into any cell in the body. Were then differentiating those cells into motor neurons that are known to die in ALS patients.

In collaboration with MIT [Massachusetts Institute of Technology], we will use the Tambourine grant to fund an advanced imaging project, called cell painting, on these motor neurons. Michael Workman, a project scientist in my laboratory, has been a key contributor to these studies. Up to six fluorescent dyes are used to label different components of the cells. With the help of an advanced, high-powered microscope and massive cloud computing, each individual neuron will be analyzed.

We will use artificial intelligence to attempt to distinguish ALS patients from healthy patients, and then look for molecular signatures within ALS patients that define subgroups. This data can be used to develop new targeted drugs to treat specific subgroups of ALSa truly personalized medicine approach leveraging the latest medical technology. This could be a big boost for clinical trials and drug development.

Read more on the Cedars-Sinai Blog:Regenerative Medicine: A New Path for ALS Treatment

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UC San Diego Develops First-In-Kind Protocol for Creating ‘Wired Miniature Brains’ – University of California San Diego

Posted: June 14, 2024 at 2:42 am

Other research possibilities for the brain organoids include disease modeling, understanding human consciousness and additional space-based experiments. In March, Muotri in partnership with NASA sent to space a number of brain organoids made from the stem cells of patients with Alzheimers disease and ALS (amyotrophic lateral sclerosis, also known as Lou Gehrigs disease). The payload returned in May, and results, which will eventually be published, are being reviewed.

Because microgravity mimics an accelerated version of Earth-based aging, Muotri should be able to witness the effects of several years of disease progression while studying the month-long missions payload, including potential changes in protein production, signaling pathways, oxidative stress and epigenetics.

Were hoping for novel findings things researchers havent discovered before, he said. Nobody has sent such a model into space, until now.

Co-authors of the study include Michael Q. Fitzgerald, Tiffany Chu, Francesca Puppo, Rebeca Blanch and Shankar Subramaniam, all of UC San Diego, and Miguel Chilln, of the Universitat Autnoma de Barcelona and the Instituci Catalana de Recerca i Estudis Avanats, both in Barcelona, Spain. Blanch is also affiliated with the Universitat Autnoma de Barcelona.

This work was supported by the National Institutes of Health R01MH100175, R01NS105969, MH123828, R01NS123642, R01MH127077, R01ES033636, R21MH128827, R01AG078959, R01DA056908, R01HD107788, R01HG012351, R21HD109616, R01MH107367, California Institute for Regenerative Medicine (CIRM) DISC2-13515 and a grant from the Department of Defense W81XWH2110306.

Disclosures: Muotri is a cofounder and has equity interest in TISMOO, a company dedicated to genetic analysis and brain organoid modeling focusing on therapeutic applications customized for autism spectrum disorder (ASD) and other neurological disorders with genetic origins. He is also the inventor of several patents related to human functional brain organogenesis, including the protocol described in the new publication.

The UC San Diego Sanford Stem Cell Institute (SSCI) is a global leader in regenerative medicine and a hub for stem cell science and innovation in space. SSCI aims to catalyze critical basic research discoveries, translational advances and clinical progress terrestrially and in space to develop and deliver novel therapeutics to patients.

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Pilot Study in JNCCN Explores New Approach for Reducing Anxiety and Improving Quality of Life after Stem Cell … – PR Newswire

Posted: June 14, 2024 at 2:42 am

Researchers at Brigham and Women's Hospital and Dana-Farber Cancer Institute found significant uptake and scalability in phone-based "PATH" intervention to improve psychological well-being in blood cancer patients.

PLYMOUTH MEETING, Pa., June 11, 2024 /PRNewswire/ -- New research in the June 2024 issue of JNCCNJournal of the National Comprehensive Cancer Networkhighlights a promising approach for alleviating distress, enhancing quality of life, improving physical function, and reducing fatigue in patients with blood cancers who undergo hematopoietic stem cell transplantation (HSCT). The study used a randomized clinical trial to evaluate the feasibility of a nine-week, phone-delivered, positive psychology program called Positive Affect for the Transplantation of Hematopoietic stem cells intervention (PATH), that was specifically tailored to the needs of this population. The findings indicate that the PATH intervention is both feasible and well-received by this patient population, as most of the patients (91%) who received the PATH intervention completed all of the intervention sessions and found them easy and helpful.

"The active identification and treatment of psychological distress, like anxiety, in patients with cancer are crucial."

"Having 9 out of 10 people complete all the sessions is great," explained lead researcherHermioni L. Amonoo, MD, MPP, MPH, Brigham and Women's Hospital/Dana-Farber Cancer Institute. "We designed PATH with the needs of HSCT survivors in mind. First, PATH is accessible to patients, as they can learn the skills and engage with the intervention over phone from wherever they areeliminating the need to travel to the cancer center. Second, the weekly exercises can be completed by patients at their convenience using the PATH manual, which guides patients on how to use the exercises and skills. This means that the actual phone sessions only last 15-20 minutes, in contrast to other well-established psychotherapies like cognitive behavioral therapy, which typically last 60-90 minutes per session. Third, we carefully curated the intervention sessions based on which activities patients can safely engage in while their immune system recovers following the transplant. For instance, unlike in other medical populations, we did not include exercises that focus on community service, which might unnecessarily expose patients to risks."

The pilot study was conducted at the Brigham and Women's Hospital/Dana-Farber Cancer Institute from August 2021 to August 2022. A total of 70 adult patients with blood cancers who have received HSCT, were randomized into two groups, with the intervention beginning about 100 days after HSCT. Those randomized into the PATH arm participated in a variety of weekly positive psychology exercises focused on gratitude, personal strengths, and meaning. Not only was participation high94% completed at least six of the nine sessions and 91% completed all ninethe intervention had promising effects on patient-reported outcomes immediately after completion of the program and again at week 18.

Dr. Amonoo added: "Cancer care providers should consider the potential benefits of psychosocial resources and interventions like PATH that focus on enriching positive emotions to bolster their patients' well-being. While the active identification and treatment of psychological distress, like anxiety, in patients with cancer are crucial, encouraging patients to engage in simple, structured, and systematic exercises aimed at fostering positive thoughts and emotions, such as gratitude, has the potential to enhance well-being as well."

"This positive psychology intervention highlights the importance of not only screening for distress but the promise of creating mechanisms that enhance well-being and reduce distress in our patients," commented Jessica Vanderlan, PhD, Manager, Siteman Psychology Service, Licensed Clinical Psychologist, Siteman Cancer Center at Barnes-Jewish Hospital and Washington University School of Medicine, Vice Chair of the NCCN Clinical Practice Guidelines in Oncology (NCCN Guidelines) Panel for Distress Managementwho was not involved in this research. "Development of clinical interventions that are brief (15-20 minutes) and delivered by phone could greatly improve patient access to care. This type of accessibility is important in an oncology population, especially in acute recovery periods with many competing demands and physical symptoms."

To read the entire study, visit JNCCN.org. Complimentary access to "A Positive Psychology Intervention in Allogeneic Hematopoietic Stem Cell Transplantation Survivors (PATH): A Pilot Randomized Clinical Trial" is available until September 10, 2024.

AboutJNCCNJournal of the National Comprehensive Cancer Network More than 25,000 oncologists and other cancer care professionals across the United States readJNCCNJournal of the National Comprehensive Cancer Network. This peer-reviewed, indexed medical journal provides the latest information about innovation in translational medicine, and scientific studies related to oncology health services research, including quality care and value, bioethics, comparative and cost effectiveness, public policy, and interventional research on supportive care and survivorship.JNCCNfeatures updates on the NCCN Clinical Practice Guidelines in Oncology (NCCN Guidelines), review articles elaborating on guidelines recommendations, health services research, and case reports highlighting molecular insights in patient care.JNCCNis published by Harborside/BroadcastMed. VisitJNCCN.org. To inquire if you are eligible for aFREEsubscription toJNCCN, visitNCCN.org/jnccn/subscribe. Follow JNCCN at x.com/JNCCN.

About the National Comprehensive Cancer NetworkThe National Comprehensive Cancer Network (NCCN) is a not-for-profit alliance of leading cancer centers devoted to patient care, research, and education. NCCN is dedicated to improving and facilitating quality, effective, equitable, and accessible cancer care so all patients can live better lives. The NCCN Clinical Practice Guidelines in Oncology (NCCN Guidelines) provide transparent, evidence-based, expert consensus recommendations for cancer treatment, prevention, and supportive services; they are the recognized standard for clinical direction and policy in cancer management and the most thorough and frequently-updated clinical practice guidelines available in any area of medicine. The NCCN Guidelines for Patients provide expert cancer treatment information to inform and empower patients and caregivers, through support from the NCCN Foundation. NCCN also advances continuing education, global initiatives, policy, and research collaboration and publication in oncology. Visit NCCN.org for more information.

Media Contact:Rachel Darwin267-622-6624[emailprotected]

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Inherited genetic factors may predict the pattern of X chromosome loss in older women – National Institutes of Health (NIH) (.gov)

Posted: June 14, 2024 at 2:41 am

Media Advisory

Wednesday, June 12, 2024

A genomic analysis co-led by NIH suggests that the DNA a woman is born with may influence how her cells respond to chromosomal abnormalities acquired with aging.

Researchers have identified inherited genetic variants that may predict the loss of one copy of a womans two X chromosomes as she ages, a phenomenon known as mosaic loss of chromosome X, or mLOX. These genetic variants may play a role in promoting abnormal blood cells (that have only a single copy of chromosome X) to multiply, which may lead to several health conditions, including cancer. The study, co-led by researchers at the National Institutes of Healths (NIH) National Cancer Institute, was published June 12, 2024, in Nature.

To better understand the causes and effects of mLOX, researchers analyzed circulating white blood cells of nearly 900,000 women across eight biobanks, of whom 12% had the condition. The researchers identified 56 common genetic variantslocated near genes associated with autoimmune diseases and cancer susceptibilitythat influenced whether mLOX developed. In addition, rare variants in a gene known as FBXO10 were associated with a doubling in the risk of mLOX.

In women with mLOX, the investigators also identified a set of inherited genetic variants on the X chromosome that were more frequently observed on the retained X chromosome than on the one that was lost. These variants could one day be used to predict which copy of the X chromosome is retained when mLOX occurs. This is important because the copy of the X chromosome with these variants may have a growth advantage that could elevate the womans risk for blood cancer.

The researchers also looked for associations of mLOX with more than 1,200 diseases and confirmed previous findings of an association with increased risk of leukemia and susceptibility to infections that cause pneumonia.

The scientists suggest that future research should focus on how mLOX interacts with other types of genetic variation and age-related changes to potentially alter disease risk.

Mitchell Machiela, Sc.D., M.P.H., Division of Cancer Epidemiology and Genetics, National Cancer Institute

Population analyses of mosaic X chromosome loss identify genetic drivers and widespread signatures of cellular selection appears June 12, 2024, in Nature.

About the National Cancer Institute (NCI):NCIleads the National Cancer Program and NIHs efforts to dramatically reduce the prevalence of cancer and improve the lives of people with cancer. NCI supports a wide range of cancer research and training extramurally through grants and contracts. NCIs intramural research program conducts innovative, transdisciplinary basic, translational, clinical, and epidemiological research on the causes of cancer, avenues for prevention, risk prediction, early detection, and treatment, including research at the NIH Clinical Centerthe worlds largest research hospital. Learn more about the intramural research done in NCIs Division of Cancer Epidemiology and Genetics. For more information about cancer, please visit the NCI website atcancer.govor call NCIs contact center at 1-800-4-CANCER (1-800-422-6237).

About the National Institutes of Health (NIH): NIH, the nation's medical research agency, includes 27 Institutes and Centers and is a component of the U.S. Department of Health and Human Services. NIH is the primary federal agency conducting and supporting basic, clinical, and translational medical research, and is investigating the causes, treatments, and cures for both common and rare diseases. For more information about NIH and its programs, visit http://www.nih.gov.

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Inherited genetic factors may predict the pattern of X chromosome loss in older women - National Institutes of Health (NIH) (.gov)

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SOPHiA GENETICS Announces Kepler Uniklinikum is Live on SOPHiA DDM Platform – BioSpace

Posted: June 14, 2024 at 2:41 am

The Hospital will use SOPHiA DDM to enhance its testing and research of blood cancers

BOSTON and ROLLE, Switzerland, June 13, 2024 /PRNewswire/ -- SOPHiA GENETICS (Nasdaq: SOPH), a cloud-native healthcare technology company and a leader in data-driven medicine, today announced that Kepler Uniklinikum, Austria's second largest hospital, is live on SOPHiA GENETICS' platform. The hospital will use the SOPHiA DDM Platform to advance its next-generation sequencing (NGS) testing and diagnostics of blood-related cancers.

Kepler Uniklinikum, which has 1,800 beds, is the central healthcare provider for Upper Austria. The hospital will implement the SOPHiA DDM Platform across its medical and chemical laboratory locations to deepen its in-house NGS testing capabilities and expand its offerings to its patients, specifically for those faced with blood cancers and disorders.

Cancer is the second most common cause of death in Austria, with about 42,000 people diagnosed with cancer each year.1 Additionally, on a global scale, blood cancers are the fifth most common type of cancer in the world.2 Advances in diagnostics and treatment of blood cancers depend on timely, cost-effective, and reliable sequencing data. The SOPHiA DDM Platform uses NGS to target key variants from FFPE, blood, or bone marrow samples, helping lead to fast and accurate detection of variants associated with the disease. The SOPHiA DDM Platform is specifically designed to compute a wide array of genomic variants and continually hones its machine learning algorithms to detect genomic variants associated with rare and challenging cases.

"Kepler Uniklinikum's implementation of the SOPHiA DDM Platform will help progress the use of data-driven medicine throughout Austria by ensuring their patients receive the most advanced and accurate testing," said Kevin Puylaert, Managing Director, EMEA, SOPHiA GENETICS. "This testing will not only help the local population but will provide valuable insights and data to support others using the SOPHiA DDM Platform around the world."

The SOPHiA DDM Platform delivers results that are nearly 100 percent reproducible to provide consistent inter- and intra-run results, ensuring stable and trustworthy sequencing data.

For more information on SOPHiA GENETICS, visit SOPHiAGENETICS.COM, or connect on LinkedIn.

About SOPHiA GENETICS SOPHiA GENETICS (Nasdaq: SOPH) is a cloud-native healthcare technology company on a mission to expand access to data-driven medicine by using AI to deliver world-class care to patients with cancer and rare disorders across the globe. It is the creator of the SOPHiA DDM Platform, which analyzes complex genomic and multimodal data and generates real-time, actionable insights for a broad global network of hospital, laboratory, and biopharma institutions. For more information, visit SOPHiAGENETICS.COM and connect with us on LinkedIn.

SOPHiA DDM for Lymphoid Malignancies is available as a CE-IVD product for In Vitro Diagnostic Use in Europe and Turkey. The information in this press release is about products that may or may not be available in different countries and, if applicable, may or may not have received approval or market clearance by a governmental regulatory body for different indications for use. Please contact support@sophiagenetics.com to obtain the appropriate product information for your country of residence.

SOPHiA GENETICS Forward-Looking Statements: This press release contains statements that constitute forward-looking statements. All statements other than statements of historical facts contained in this press release, including statements regarding our future results of operations and financial position, business strategy, products, and technology, as well as plans and objectives of management for future operations, are forward-looking statements. Forward-looking statements are based on our management's beliefs and assumptions and on information currently available to our management. Such statements are subject to risks and uncertainties, and actual results may differ materially from those expressed or implied in the forward-looking statements due to various factors, including those described in our filings with the U.S. Securities and Exchange Commission. No assurance can be given that such future results will be achieved. Such forward-looking statements contained in this press release speak only as of the date hereof. We expressly disclaim any obligation or undertaking to update these forward-looking statements contained in this press release to reflect any change in our expectations or any change in events, conditions, or circumstances on which such statements are based, unless required to do so by applicable law. No representations or warranties (expressed or implied) are made about the accuracy of any such forward-looking statements.

1 https://ascopost.com/issues/october-25-2022/incidence-and-cancer-related-mortality-in-austria/ 2 https://www.worldwidecancerresearch.org/news-opinion/2022/september/blood-cancer-everything-you-need-to-know/

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Company Codes: NASDAQ-NMS:SOPH

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Ancient Neanderthal DNA found to influence autism susceptibility – PsyPost

Posted: June 14, 2024 at 2:41 am

A recent study published in Molecular Psychiatry reveals that certain genetic traits inherited from Neanderthals may significantly contribute to the development of autism. This groundbreaking research shows that specific Neanderthal genetic variants can influence autism susceptibility, suggesting a link between our ancient relatives and modern neurodevelopmental conditions.

The study was motivated by the longstanding curiosity about how archaic human DNA, particularly from Neanderthals, influences modern human health. Homo neanderthalensis, commonly known as Neanderthals, are our closest known cousins on the hominin tree of life. It is estimated that populations of European and Asian descent have about 2% Neanderthal DNA, a remnant from interbreeding events that occurred when anatomically modern humans migrated out of Africa around 47,000 to 65,000 years ago.

While previous studies have identified Neanderthal genetic contributions to traits like immune function, skin pigmentation, and metabolism, the role of these ancient genes in brain development and neurodevelopmental conditions like autism has remained largely unexplored. In their new study, the researchers aimed to fill that gap by investigating whether Neanderthal DNA is more prevalent in autistic individuals compared to non-autistic controls.

Autism is a neurodevelopmental condition characterized by challenges in social interaction, communication, and repetitive behaviors or restricted interests. The severity and specific manifestations of these traits can vary widely among individuals. Given that autism is characterized by distinct patterns in brain connectivity, the researchers sought to better understand whether these patterns could be linked to Neanderthal DNA.

I should state that I am on the autism spectrum myself. Ive been involved with the online autistic and neurodiversity communities since circa 2003. I was a moderator on the well known forum, Wrong Planet, under the handle, Sophist, and later developed my own autism website called Gestalt, explained study author Emily Casanova, an assistant professor of neuroscience at Loyola University New Orleans and creator of the website Science Over a Cuppa.

So, Ive been interested in autism and figuring out what makes it tick for a long time. In the last decade, Ive focused more on the genetics side, but Ive also had an ongoing interest in evolutionary biology. For many years, that latter interest was just a hobby, but in recent years Ive begun working more on things like studying the evolution of autism genes and just trying to understand how a lot of these developmentally-related genes evolve over time.

You may be wondering what that has to do with Neanderthals! Well, one of the topics Ive been studying is how hybridization (the coming-together of two species) influences the offspring over subsequent generations, Casanova continued. Hybridization has a tendency to shake things up genetically not just because youre splicing two species together in an additive process but because some genetic variants dont always work so well when theyre suddenly thrown together in a single genome.

Variations tend to have partners they like to travel with over generations and when sexual recombination splits them apart, sometimes that can create some new problems in the offspring. Interestingly, this process may also be a stimulus for more rapid evolution following hybridization.

So, Im very interested in these Neanderthal variants not just in understanding how they may influence autism susceptibility but even how they might have guided our own subsequent brain evolution over the last 50,000 years, she explained. I dont think its a coincidence that many of the variants implicated in autism are also implicated in human intelligence, so I find that possibility fascinating.

The research team utilized whole exome sequencing (WES) data from the Simons Foundation Powering Autism Research (SPARK) Database, focusing on autistic individuals and their unaffected siblings. They compared these groups against individuals from the Genotype-Tissue Expression (GTEx) and 1000 Genomes (1000G) databases. Specifically, the researchers examined single nucleotide polymorphisms (SNPs) derived from Neanderthals, which are variations in a single DNA building block.

The researchers found that autistic individuals had a higher prevalence of rare Neanderthal-derived genetic variants compared to non-autistic controls. These rare variants, which occur in less than 1% of the population, were significantly enriched in the genomes of autistic individuals across three major ethnic groups: black non-Hispanic, white Hispanic, and white non-Hispanic.

I know a lot of people are going to read the headline and immediately assume that autistic people have more Neanderthal DNA than non-autistic people that theyre somehow more Neanderthal,' Casanova told PsyPost. I wouldnt say I blame them for the assumption, especially when the Neanderthal Theory of Autism had already been proposed and popularized by Leif Ekblad, an autistic independent researcher, as far back as 2001. This idea made its way around the online autistic community in the early 2000s and served partly as inspiration for Ekblads Aspie Quiz, which has continued to be one of the most popular online autism-related quizzes.

Our results are a little more nuanced than autistic people are just more Neanderthal. For background, the human genome is made up of over 3 billion nucleotide pairs. The vast majority of our genomes is pretty identical to one another. But theres a few places in the human genome that are sites of variation.

Neanderthal DNA provides some of that variation and some of those variants are common (1% or more of the population has that particular variant) or they can be rare (less than 1% has that variant), Casanova explained. In our study, weve found that autistic people, on average, have more rare Neanderthal variants, not that they have more Neanderthal DNA in general. That means that while not all Neanderthal DNA is necessarily influencing autism susceptibility, a subset is.

In contrast to the rare variants, the study found that common Neanderthal-derived variants were less prevalent in black non-Hispanic and white Hispanic autistic individuals compared to controls. Common variants are those present in 1% or more of the population. This finding was not observed in white non-Hispanic autistic individuals, who did not show significant differences in common Neanderthal DNA compared to controls or unaffected siblings.

The researchers also identified specific clinical associations between Neanderthal-derived variants and autism-related traits. For example, a particular SNP (rs112406029) in the SLC37A1 gene was significantly associated with epilepsy in white non-Hispanic autistic individuals. This variant was more common in autistic individuals with epilepsy than in those without, and was even more prevalent in those with a family history of the condition.

Similar associations were found in other ethnic groups, linking certain Neanderthal variants to traits such as intellectual disability, language delay, and language regression. These findings suggest that Neanderthal-derived genetic variants may not only contribute to autism susceptibility but also influence specific comorbid conditions and traits.

I was rather surprised that many of the Neanderthal-derived variants we found that were associated with autism dramatically varied by ethnic group, Casanova said. In hindsight, I suppose that shouldnt be so surprising, but it does mean that a lot of these weak variants that are playing roles in autism are influenced by the background genome, which varies by ethnicity.

So, one variant may be strongly linked with autism in black Americans, while that same variant doesnt appear to be playing a measurable role in white Hispanics and non-Hispanics. To me it suggests that our tendency to white wash genetics and ignore variants that arent implicated across all genetic backgrounds means that were missing out on a lot of important genetic factors.

The findings have significant implications for our understanding of autism and its genetic underpinnings. By highlighting the role of ancient Neanderthal DNA, the research opens new avenues for exploring how hybridization events between archaic and modern humans have shaped neurodevelopmental conditions.

In this current study, we only investigated the parts of the genome that contain protein-coding genes (known as the exome), Casanova noted. In the next phase, we plan on looking at the entire genome, since theres a lot of interesting regulatory material thats contained in those regions thats undoubtedly influencing when and how genes are expressed. We also plan on including the Denisovan genome in our next phase of study to see if that DNA may be playing roles in autism in people with Asian/Native American backgrounds.

Some people in the autistic community get uncomfortable with genetics studies, the researcher added. In part, this is rooted in fears related to eugenics. The autistic community is well aware of how prenatal genotyping of Down Syndrome has led to abortion in about 30% of those cases. But I would just like to assure people that these Neanderthal-derived variants are also occurring in people, especially family members, without autism. So, while identifying these susceptibility factors may help us build a fuller picture of autism and its very complex roots, this knowledge cannot be used to aid in eugenics or similar agendas.

The study, Enrichment of a subset of Neanderthal polymorphisms in autistic probands and siblings, Rini Pauly, Layla Johnson, F. Alex Feltus, and Emily L. Casanova.

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Exome sequence analysis identifies rare coding variants associated with a machine learning-based marker for … – Nature.com

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Secret to tamping down GVHD may lie in microbial genetics – Fred Hutchinson Cancer Center

Posted: June 14, 2024 at 2:41 am

T cells: BMTs double-edged sword

Bone marrow transplants, also known as blood stem cell transplants or hematopoietic stem cell transplants (HST), revolutionized blood cancer treatment. After a conditioning regimen wipes out as many blood cancer cells as possible and also wiping out healthy blood stem cells transplant recipients receive healthy new donor bone marrow or blood stem cells. These take root in the bone marrow and grow new oxygen-carrying red blood cells and infection-fighting white blood cells.

With the stem cells come mature donor immune cells, including T cells,a specialized type of immune cell critical both to a bone marrow transplants success in treating cancer, and the driving force behind GVHD.

T cells use a specialized molecule, called a T-cell receptor, or TCR, to read bits of proteins pinned to the surface of cells by a molecular peg. These protein-peg complexes act as bulletins of a cells health status, and T cells are trained to leave healthy cells alone.

But when a T cell is dumped in a new environment, they can misread these bulletins. These T cells may attack a BMT recipients healthy tissue, even as some donor T cells kill off lingering tumor cells and prevent relapse.

To help ensure that donor T cells understand the messages theyre reading, hematologists try to ensure that the pegs theyll see in a recipient match the pegs theyre used to seeing in their home turf, the donor. If they are well-matched, T cells are more likely to understand the message that their new host is self and safe.

This is called tissue typing.

But tissue typing isnt perfect. The pegs, called HLA, for human leukocyte antigen (or MHC, for major histocompatibility complex) are among the most variable genes humans have. And each person has several MHC genes, each with its own dizzying variety. On top of this, the little protein messages cradled by MHC molecules can vary between recipient and donor just enough to send a "danger!" signal to donor T cells (even when MHC genes match perfectly).

Right now, treatments for GVHD, like corticosteroids, muffle the anti-tumor cells along with those driving GVHD.

Its the holy grail of transplant: separating GVHD from the graft-vs.-leukemia effect, Yeh said. I wanted to understand how to improve GVHD from the standpoint of the individual T cells.

He hoped that if he could identify the GVHD-promoting T cells, he would be able to devise strategies to remove them, leaving only the leukemia-targeting cells behind.

Still working from the assumption that recipient and donor genetics would be the key to solving this dilemma, Yeh performed twin transplant studies. In these, bone marrow from one donor mouse is split apart and transplanted into two genetically identical recipient mice.

Yeh and Hill expected that, faced with the same genetic milieu, the same T cells that respond to the new environment would expand in each recipient. (TCRs are even more variable than MHCs: each new T cell builds a bespoke TCR that is one of more than a quadrillion possible TCRs.)

By comparing the donor TCRs in each recipient, the scientists expected it would be possible to find the recipient-targeting TCRs that could drive GVHD.

But the T cells confounded them. In each recipient, a pool of T cells with certain TCRs would expand, suggesting that they were responding to something in their new environment.

Even in completely identical donor and recipients, theres almost no overlap in which T cells expanded, Hill said. This is shocking given how we currently think about alloreactivity [the T-cell response to MHC variants].

But an individual may have billions of different TCRs floating around some found on only a single T cell. Yeh, working with Fred Hutch computational biologist Phil Bradley, PhD, developed mathematical models to confirm that the lack of overlap didnt reflect the chance that each twin had received a different set of rare TCRs.

Yeh found that antibiotic treatment (two weeks prior to one week after transplant), but not total-body irradiation, reduced the pool of T cells that expanded after transplant. Previous work had suggested that the microbiome can influence GVHD through general immune mechanisms. What if the T cells were responding to the microbes through their TCRs?

Yeh took advantage of the fact that mice bred in different facilities have different microbiome makeups. He gave a bone marrow transplant to two sets of recipient mice (with higher and lower levels of a certain bacterium). To the donor bone marrow, he added T cells genetically engineered to carry TCRs that detect the bacterium.

He found that not only did the bacterium-targeting T cells expand more in the mice with higher levels of the bacterium, but also exacerbated GVHD lethality. Yeh further showed that GVHD does not originate with the bacterium-targeting T cells.

By themselves they dont do too much, he said.

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Secret to tamping down GVHD may lie in microbial genetics - Fred Hutchinson Cancer Center

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