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FDA, NIH, and 15 private organizations join forces to increase effective gene therapies for rare diseases – FDA.gov

Posted: October 28, 2021 at 2:00 am

For Immediate Release: October 27, 2021

The U.S. Food and Drug Administration, the National Institutes of Health, 10 pharmaceutical companies and five non-profit organizations have partnered to accelerate development of gene therapies for the 30 million Americans who suffer from a rare disease. While there are approximately 7,000 rare diseases, only two heritable diseases currently have FDA-approved gene therapies. The newly launched Bespoke Gene Therapy Consortium (BGTC), part of the NIH Accelerating Medicines Partnership (AMP) program and project-managed by the Foundation for the National Institutes of Health (FNIH), aims to optimize and streamline the gene therapy development process to help fill the unmet medical needs of people with rare diseases.

By leveraging on experience with a platform technology and by standardizing processes, gene therapy product development can be accelerated to allow more timely access to promising new therapies for patients who need them most, said Peter Marks, M.D., Ph.D., Director of the Food and Drug Administration (FDA)s Center for Biologics Evaluation and Research. FDA is committed to developing a regulatory paradigm that can advance gene therapies to meet the needs of patients with rare diseases.

Most rare diseases are caused by a defect in a single gene that could potentially be targeted with a customized or bespoke therapy that corrects or replaces the defective gene, said NIH Director Francis S. Collins, M.D., Ph.D. There are now significant opportunities to improve the complex development process for gene therapies that would accelerate scientific progress and, most importantly, provide benefit to patients by increasing the number of effective gene therapies.

A single rare disease affects small numbers of people, but rare diseases collectively affect millions. Most rare inherited diseases stem from a specific gene mutation that is already known, making gene therapy a promising therapeutic approach. However, gene therapy development for rare diseases is highly complex, time consuming and expensive. Moreover, the development process is stymied by limited access to tools and technologies, lack of standards across the field, and a one-disease-at-a-time approach to therapeutic development. A standardized therapeutic development model that includes a common gene delivery technology (a vector) could allow for a more efficient approach to specific gene therapies, saving time and cost.

Rare diseases affect 25 to 30 million Americans, but because any given rare disorder affects so few patients, companies often are reluctant or unable to invest the years of research and millions of dollars necessary to develop, test and bring individualized gene therapy treatments for a single disease to market, said Joni L. Rutter, Ph.D., acting director of NIHs National Center for Advancing Translational Sciences (NCATS). The BGTC aims to make it easier, faster and less expensive to pursue bespoke gene therapies in order to incentivize more companies to invest in this space and bring treatments to patients.

A primary aim of BGTC is to improve understanding of the basic biology of a common gene delivery vector known as the adeno-associated virus (AAV). BGTC researchers will examine the biological and mechanistic steps involved in AAV vector production, vector delivery of genes into human cells and how therapeutic genes are activated in target cells. These results will provide important information for improving the efficiency of vector manufacturing and enhancing the overall therapeutic benefit of AAV gene therapy.

To improve and accelerate gene and vector manufacturing and production processes, the BGTC program will develop a standard set of analytic tests to apply to the manufacture of viral vectors made by consortium researchers. Such tests could be broadly applicable to different manufacturing methods and make the process of developing gene therapies for very rare conditions much more efficient.

A clinical component of BGTC-funded research will support between four and six clinical trials, each focused on a different rare disease. These diseases are expected to be rare, single-gene diseases with no gene therapies or commercial programs in development and that already have substantial groundwork in place to rapidly initiate preclinical and clinical studies. The trials will employ different types of AAV vectors that have been used before in clinical trials. For these trials, the BGTC will aim to shorten the path from studies in animal models of disease to human clinical trials.

The BGTC also will explore methods to streamline regulatory requirements and processes for the FDA approval of safe and effective gene therapies, including developing standardized approaches to preclinical testing (e.g., toxicology studies).

NIH and private partners will contribute approximately $76 million over five years to support BGTC-funded projects. This includes about $39.5 million from the participating NIH institutes and centers, pending availability of funds. NCATS, which developed the related Platform Vector Gene Therapy (PaVe-GT) program and is the NIH lead institute for BGTC, expects to contribute approximately $8 million over five years.

Private partners include Biogen Inc., Cambridge, Massachusetts; Janssen Research & Development, LLC, Raritan, New Jersey; Novartis Institutes for BioMedical Research, Cambridge, Massachusetts; Pfizer Inc., New York, New York; REGENXBIO Inc., Rockville, Maryland.; Spark Therapeutics, Philadelphia, Pennsylvania; Takeda Pharmaceutical Company Limited, Deerfield, Illinois; Taysha Gene Therapies, Dallas, Texas; Thermo Fisher Scientific Inc., Waltham, Massachusetts; and Ultragenyx Pharmaceutical, Novato, California. Several non-profit partners also are involved, including the Alliance for Regenerative Medicine (ARM), Washington, D.C.; the American Society of Gene and Cell Therapy, Milwaukee, Wisconsin; CureDuchenne, Newport Beach, California; National Organization for Rare Disorders (NORD), Quincy, Massachusetts; and The National Institute for Innovation in Manufacturing Biopharmaceuticals (NIIMBL), Newark, Delaware.

In addition to NCATS, participating NIH institutes include the Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Eye Institute; National Heart, Lung, and Blood Institute; National Human Genome Research Institute; National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institute of Dental and Craniofacial Research; National Institute of Mental Health; National Institute of Neurological Disorders and Stroke; and National Institute on Deafness and Other Communication Disorders.

The BGTC is the first AMP initiative focused on rare diseases. Other ongoing AMP projects bring together scientific talent and financial resources from academia, industry, philanthropy, and government, and focus on improving the productivity of therapeutic development for common metabolic diseases, schizophrenia, Parkinsons disease, Alzheimers disease, type 2 diabetes and autoimmune disorders rheumatoid arthritis and systemic lupus erythematosus.

About the Foundation for the National Institutes of Health: The Foundation for the National Institutes of Health (FNIH) creates and manages alliances with public and private institutions in support of the mission of the NIH. The FNIH works with its partners to accelerate biomedical research and strategies against diseases and health concerns in the United States and across the globe. Established by Congress in 1990, the FNIH is a not-for-profit 501(c)(3) charitable organization. For additional information about the FNIH, please visit https://fnih.org.

About the National Center for Advancing Translational Sciences (NCATS): NCATS conducts and supports research on the science and operation of translation the process by which interventions to improve health are developed and implemented to allow more treatments to get to more patients more quickly. For more information about how NCATS helps shorten the journey from scientific observation to clinical intervention, visit https://ncats.nih.gov.

About the Food and Drug Administration (FDA): The FDA, an agency within the U.S. Department of Health and Human Services, protects the public health by assuring the safety, effectiveness, and security of human and veterinary drugs, vaccines and other biological products for human use, and medical devices. The agency also is responsible for the safety and security of our nations food supply, cosmetics, dietary supplements, products that give off electronic radiation, and for regulating tobacco products.

About the National Institutes of Health (NIH): NIH, the nation's medical research agency, includes 27 Institutes and Centers and is a component of the U.S. Department of Health and Human Services. NIH is the primary federal agency conducting and supporting basic, clinical, and translational medical research, and is investigating the causes, treatments, and cures for both common and rare diseases. For more information about NIH and its programs, visit http://www.nih.gov.

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The FDA, an agency within the U.S. Department of Health and Human Services, protects the public health by assuring the safety, effectiveness, and security of human and veterinary drugs, vaccines and other biological products for human use, and medical devices. The agency also is responsible for the safety and security of our nations food supply, cosmetics, dietary supplements, products that give off electronic radiation, and for regulating tobacco products.

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Epigenetic Study Links Smoke Exposure in Early Life to Advanced Aging – WhatIsEpigenetics.com

Posted: October 28, 2021 at 1:57 am

Not everyone ages gracefully. Thats true for people who dont take care of themselves as adults, but its also true for someone whose health was jeopardized at a young age from contact with something harmful, like air pollution or poor diet. In particular, smoking exposure during early development has been linked with numerous adverse health conditions, and now a new study shows that it, as well as other harmful pollutants, can cause advanced biological aging.

Early life, beginning in the womb through childhood, is a crucial phase in human development where susceptibility to environmental exposures is higher. Changes brought about during this time period can have a lasting effect on a persons metabolism and physiology, thus leading to either good health or diseases later on in life.

Knowing which and why certain exposures are beneficial or detrimental to early development provides evidence for avoidance or increased contact with them. Because aging is a continuous process that occurs at a cellular level throughout life, it can be measured to estimate health risks. One innovative way to measure biological age is through the use of what is known as an epigenetic clock, which measures DNA methylation in specific regions of the genome.

In an analysis led by the Barcelona Institute for Global Health (ISGlobal), researchers investigated the association of over 100 various environmental exposures and the epigenetic clock of 1,000 or more children. What they found was that tobacco smoke, above all, positively correlated with advanced aging.

The epigenetic clock allows us to assess whether someones biological age is older or younger than his or her chronological age, explains author and ISGlobal researcher, Mariona Bustamante.

Biological, or epigenetic, age acceleration has been linked to several age-related conditions like cancer, cellular senescence, mortality, and more. Although DNA methylation is used to calculate epigenetic age, it is just one mechanism by which epigenetics affects gene expression. Histone modifications, chromatin state, and non-coding RNAs can also impact how genes are expressed.

In the past, most epigenetic aging studies have been performed on adults to evaluate environmental exposure, and usually for just one type of exposure. This study was the first to assess a link between early-life exposome of some 83 prenatal and 103 in early childhood exposure with epigenetic age. The results can be found online in the Environment International journal.

While tobacco use stood out as a top factor impacting aging, it was determined that maternal smoking during pregnancy accelerated epigenetic aging during the first years of childhood, as did parental smoking and indoor levels of black carbon (air pollution from partial fuel combustion).

The study also indicated two exposures that proved to have a protective effect against aging. They included the organic pesticide dimethyl dithiophosphate (DMDTP) and a persistent organic pollutant called polychlorinated biphenyl (PCB)-138.

Further research is needed to explain these results, but the former could be due to a higher intake of fruits and vegetables, said first author Paula de Prado-Bert, while the latter could be explained by its correlation with body mass index.

The results regarding smoking are in-line with other studies done on adults. The researchers believe the epigenetic modifications involved here most likely affect similar pathways for immune response, cell cycle, and detoxification, and therefore ultimately impact health from early life onward.

Although the study did have its limitations, like covering all variables of the exposome, it is a start to hopefully more studies that will provide convincing evidence to the dangers of certain toxins on childhood, especially smoking. Aging is a public health issue that everyone should be concerned about. So future research is needed to help drive government policy toward reducing environmental exposures and promote a healthy aging from the very start of life.

Source:Paula de Prado-Bert, et al. (2021).The early-life exposome and epigenetic age acceleration in children. Environment International.

Reference:Exposure to Tobacco Smoke in Early Life is Associated with Accelerated Biological Ageing. Barcelona Institute for Global Health (ISGlobal). August 26, 2021.

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Salarius Pharmaceuticals (SLRX) is Developing a Novel LSD1 Inhibitor, Positioning it as a Significant Mover in Epigenetics-Based Cancer Therapies -…

Posted: October 28, 2021 at 1:57 am

Image by the National Cancer Institute on Unsplash

The following post was written and/or published as a collaboration between Benzingas in-house sponsored content team and a financial partner of Benzinga.

Salarius Pharmaceuticals Inc. (NASDAQ: SLRX) is developing a novel epigenetics-based treatment that targets the lysine-specific histone demethylase 1 (LSD1) enzyme, which researchers believe plays a key role in the growth of difficult-to-treat cancer cells. Salarius lead drug candidate, seclidemstat, has received Fast Track Designation, Orphan Drug Designation and Rare Pediatric Disease Designation for Ewing sarcoma from the U.S. Food and Drug Administration.

As Salarius works toward getting its pioneering new treatment to market as fast as possible, heres what Seclidemstat could mean for sarcoma patients and whats on the horizon for the company.

Sarcoma Patients Struggle with Aggressive Cancers and Limited Treatment Options

Ewing sarcoma is a rare and very deadly cancer that begins in a patients bones and primarily affects children and young adults.

While rare, there are about 500 new cases diagnosed in the United States each year. Of those, 40% will not respond to existing first-line treatments, which include chemotherapy, radiation, and surgery, to remove tumors from the bone. For those who dont see improvements with those first-line treatments or do but then relapse later on, as many as 90% will die within 5 years.

This high mortality rate paired with the fact that Ewing sarcoma primarily affects children and adolescents makes it an urgent priority for cancer researchers around the world.

Other sarcomas, while also rare, feature similar mortality rates and are often equally lacking in effective treatment options. With about 1,500 new cases of myxoid liposarcoma and FET-rearranged sarcomas in the U.S. each year, and a 5-year survival rate ranging from just 16% to 81% depending on how early the cancer was caught, Salarius hopes to get similar regulatory designations to facilitate seclidemstats development for the treatment of other sarcomas as well.

Story continues

As a treatment for Ewing sarcoma alone, Seclidemstat could generate an estimated $200 million in global sales annually, while hoping to significantly improving patient outcomes and quality of life. If approved for myxoid liposarcoma and FET-rearranged sarcoma as well, it could generate an additional $200 million per year.

Salarius Launches new Clinical Trials with Results Anticipated by 2022

Seclidemstat is currently being studied in 2 ongoing clinical trials as part of a treatment combination with chemotherapy agents. Salarius also expanded its clinical programs to study the LSD1 inhibitors potential to treat other sarcomas based on encouraging results from preclinical studies and early clinical trial data.

Going forward, the company is enrolling patients in a slate of new clinical trials set to begin later this year. That includes a clinical trial to study Seclidemstat in combination with Keytruda, an antibody-based drug manufactured by Merck & Co. Inc. (NYSE: MRK) to treat gynecological cancers.

Updates from Salariuss in-progress trials are expected to be announced in the 2nd half of this year with more robust data readouts planned to occur mid-next year. Updates from the trials the company is currently enrolling or planning to initiate soon are expected to be announced by the 2nd half of 2022.

For more information on Salarius, click here.

The preceding post was written and/or published as a collaboration between Benzingas in-house sponsored content team and a financial partner of Benzinga. Although the piece is not and should not be construed as editorial content, the sponsored content team works to ensure that any and all information contained within is true and accurate to the best of their knowledge and research. This content is for informational purposes only and not intended to be investing advice.

The author of this piece does not hold shares of any of the companies mentioned. Redington, Inc. employees and members of their families may from time own an equity interest in companies mentioned herein.

The preceding article is sponsored by the clinical communications unit of Redington, Inc, which is paid by Salarius Pharmaceuticals to provide investor communications services. The information contained in this article in no way represents investment advice or opinion on the part of Benzinga or its writers and is intended for informational purposes only.

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2021 Benzinga.com. Benzinga does not provide investment advice. All rights reserved.

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Epigenetics Diagnostic Market to Witness Growth Acceleration | Qiagen, Abcam plc, Novartis AG, Thermo Fisher Scientific IMIESA – IMIESA

Posted: October 28, 2021 at 1:57 am

A2Z Market Research announces the release of Epigenetics Diagnostic Market research report. The market is predicted to grow at a healthy pace in the coming years. Epigenetics Diagnostic Market 2021 research report presents an analysis of market size, share, and growth, trends, cost structure, statistical and comprehensive data of the global market.

The top companies in this report include: Qiagen, Abcam plc, Novartis AG, Thermo Fisher Scientific, Inc., Roche Diagnostics, Eisai Co. Ltd., Active Motif, Merck, Illumina, Inc., Diagenode Diagnostics, Zymo Research Corporation, CellCentric, Valirx, .

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OncologNon-oncology

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The accessibility of the labor force is by all accounts disturbing the inventory network of the worldwide Epigenetics Diagnostic market as the lockdown and the spread of the infection are pushing individuals to remain inside. The presentation of the Epigenetics Diagnostic makers and the transportation of the products are associated. If the assembling movement is stopped, transportation and, likewise, the store network additionally stops. The stacking and dumping of the items, i.e., crude materials and results (fixings), which require a ton of labor, is likewise vigorously affected because of the pandemic. From the assembling plant entryway to the stockroom or from the distribution center to the end clients, i.e., application ventures, the whole Epigenetics Diagnostic inventory network is seriously compromised because of the episode.

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Epigenetics Diagnostic Market to Witness Growth Acceleration | Qiagen, Abcam plc, Novartis AG, Thermo Fisher Scientific IMIESA - IMIESA

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Epigenetics-Based Kits Market To Witness High Growth In Near Future IMIESA – IMIESA

Posted: October 28, 2021 at 1:57 am

The Epigenetics-Based Kits Market research report systematicallyexplains each and every aspect related to the Global Epigenetics-Based Kits Market, which facilitates the reports reader to study and evaluate the upcoming market trend and execute the analytical data to promote the business.

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Epigenetics-based kits market is expected to gain market growth in the forecast period of 2021 to 2028. Data Bridge Market Research analyses the market to grow at a CAGR of 12.90% in the above-mentioned forecast period.

Key Market Competitors Covered in the report:

Zymo Research; Active Motif, Inc.; Thermo Fisher Scientific Inc.; Promega Corporation; New England Biolabs; Agilent Technologies, Inc.; PerkinElmer Inc.; Bio-Rad Laboratories, Inc.; Shivom Ventures Limited; AsisChem Inc.; Enzo Life Sciences, Inc.; EpiGentek Group Inc.; BioVision Inc.; GeneTex, Inc. among others.(Customization Available)

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Part 03: Research Methodology

Part 04: Market Landscape

Part 05: Pipeline Analysis

Part 06: Market Sizing

Part 07: Five Forces Analysis

Part 08: Market Segmentation

Part 09: Customer Landscape

Part 10: Regional Landscape

Part 11: Decision Framework

Part 12: Drivers and Challenges

Part 13: Market Trends

Part 14: Vendor Landscape

Part 15: Vendor Analysis

Part 16: Appendix

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LXRepair, Gustave Roussy Ink Research Partnership in Personalized Radiotherapy – Precision Oncology News

Posted: October 28, 2021 at 1:57 am

NEW YORK LXRepair and Gustave Roussy on Thursday said they have launched a joint laboratory to advance personalized cancer radiotherapy.

The new lab, dubbed Radio Care, will focus on advancing LXRepair's functional response prediction assays, which use DNA repair signals from blood or tumor samples to predict radiotherapy toxicity and patient responses. The biotech and cancer center, both in France, received funding from the country's National Research Agency's LABCOM program to launch the lab.

Within the partnership, Paris-based Gustave Roussy will contribute its radiotherapy expertise, while Grenoble, France-based LXRepair will utilize its in vitro assay platform. The predictive platform assesses functional signatures of DNA repair biomarkers in patients' blood and tumor samples using a biochip containing damaged DNA. Fluorescence analysis then reveals the interactions that occur at each damage site when the DNA repair enzymes from the patients' samples encounter the DNA on the chip. By analyzing the reactions, LXRepair claims its assay can characterize the efficiency and accuracy of patients' DNA repair mechanisms and predict their treatment response.

According to the firm, this approach is more "relevant and actionable" than genomic DNA repair assays, in part because it considers all possible molecular regulation, including epigenetics, transcription, and pathway reactivation, among other factors. It is developing the test to predict patients' responses to chemotherapy as well as radiation.

The firm is currently evaluating its functional assay prediction approach in several clinical studies, including one exploring biomarkers of radiotoxicity and another prospective trial focused on identifying biomarkers of radio-chemotoxicity and radio-chemoresistance among head and neck cancer patients.

LXRepair's tests are in the clinical validation phase for breast and prostate cancers, and one of the goals of the Radio Care lab's research will be to expand this approach to other tumor types.

"Making our assays available to oncologists for the global monitoring of a set of enzymatic biomarkers of DNA repair from a blood sample meets an important medical need," LXRepair President and CSO Sylvie Sauvaigo, said in a statement. "We have reached a turning point in the quest of radiotherapy personalization Radio Care is a unique opportunity to accelerate the shift to personalized radiotherapy and is a great honor."

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Study Underway to Evaluate New PD-1/CD3 Antibody in T-cell Lymphoma – Targeted Oncology

Posted: October 28, 2021 at 1:56 am

A trial is currently recruiting across the US to investigate the safety of a new anti-PD-1/CD3 antibody for the treatment of relapsed or refractory T-cell lymphoma. It aims to enroll 86 patients.

A trial to investigation a new anti-PD-1/CD3 bispecific antibody, ONO-4685, for the treatment of relapsed or refractory T-cell lymphoma, is currently recruiting across the United States, according to a press release by ONO Pharma USA, Inc.

ONO-4695 binds to human PD-1 and CD3. It is being developed simultaneously as a treatment for autoimmune diseases and hematologic malignancies. PD-1 is expressed in activated T and B cells, along with malignant T-cells in some subtypes of T-cell lymphomas. CD3 is also a component protein of T-cell receptors. Non-clinical data suggests that ONO-4695 may be active against T-cell lymphomas.

In interventional, single-group assignment, open label study (NCT05079282) has an estimated enrollment of 86 participants and an estimated study completion date of July 2026. The primary end points of the study are the incidence, nature, and severity of treatment-emergent adverse events (AEs) and treatment-emergent serious AEs, along with estimated maximum tolerated dose. Secondary end points include plasma concentration of ONO-4685 up to 48 weeks, the plasma concentration of anti-drug antibodies up to 48 weeks, and the antitumor activity of ONO-4685 up to 1 year.

During the study, all patients will receive ONO-4685 monotherapy. Treatment will be administered by intravenous infusion and continued until disease progression or unacceptable toxicity.

In order to participate in the study, patients must be at least 18 years of age or older at the time of screening, have a confirmed diagnosis of one of the following:

Additionally, the patient must have received at least 2 prior systemic therapies, at least 1 measurable lesion if the patient has PTCL, patients with CTCL must have assessable disease, an ECOG performance status of 0-2, a life expectancy of at least 3 months, and adequate bone marrow, renal, and hepatic functions.

Patients with central nervous system involvement, adult T-cell leukemia/lymphoma, prior allogeneic stem cell transplant, prior treatment with an anti-PD-1/anti-PD-L1, a history Mycobacterium tuberculosis infection within 2 years of the first study dose, systemic active infection including HIV, and those who are pregnant or lactating are not eligible to participate.

"We are excited to initiate the phase 1 study of ONO-4685, an anti-PD-1/CD3 bispecific antibody with a novel mechanism of action, and hope that ONO-4685 will provide benefit to the patients with relapsed or refractory T-cell lymphoma in the US one day," saidMasahiro Katayama, executive vice president, US/EU and head of clinical development, ONO PharmaUSA, Inc in a press release.

The study is currently recruiting in Alabama, California, Massachusetts, New York, North Carolina, and Texas.

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Moving Past Conflation of Race and Genetics – Newswise

Posted: October 28, 2021 at 1:55 am

Newswise PHILADELPHIA (October 27, 2021) -- Race is not genetic. Race is a social and political construct. However, the conflation of race and genetics is one way that racism persists in medicine and research.

In a new viewpoint article in theJournal of the American Medical Association (JAMA) Pediatrics,two researchers from theUniversity of Pennsylvania School of Nursing(Penn Nursing) explore the history behind, and implications of, the conflation of race and genetics using examples from the pediatric literature. They provide insight into why its a fallacy and what scientists and clinicians can do to move past the use of race as a tool for classification in laboratory and clinical research.

We need to admit that race is a social construct and conduct research accordingly. Continuing education is urgently needed for scientists and clinicians about the differences between genetics and race, saysRebecca Clark, PhD, MSN, RN, CNM, WHNP-BC, Assistant Professor of Nursing at Penn Nursings Center for Health Outcomes and Policy Research (CHOPR) and one of the authors of the article.

In the article, the authors discuss two studies which examined racial differences in the development and treatment of neonatal abstinence syndrome (NAS), sometimes more specifically called neonatal opioid withdrawal syndrome (NOWS), among Black and White newborns. The studies reported racial differences in treatment and interpreted this as reflecting genetic differences between the study participants, instead of interpreting their findings as an example of racism appearing in the form of inequitable treatment according to race.

When biology and race are conflated in the context of NAS, misdiagnoses and underdiagnoses result. Such conflation also serves as a continued reinforcement of racist beliefs and systems, saysRachel French, PhD, RN, a National Clinician Scholar at Penn Nursings CHOPR and coauthor of the article. The article Conflating Race and Genetics Among Newborns with Neonatal Abstinence Syndrome is availableonline.

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About the University of Pennsylvania School of Nursing

The University of Pennsylvania School of Nursingis one of the worlds leading schools of nursing. For the sixth year in a row, it is ranked the #1 nursing school in the world by QS University. In a first for any undergraduate Bachelor of Science in Nursing (BSN) program in the country, our BSN program is ranked # 1 in the 2022 U.S. News & World Reports Best Colleges rankings. Penn Nursing is also consistently ranked highly in the U.S. News & World Report annual list of best graduate schools and is ranked as one of the top schools of nursing in funding from the National Institutes of Health. Penn Nursing prepares nurse scientists and nurse leaders to meet the health needs of a global society through innovation in research, education, and practice. Follow Penn Nursing on:Facebook,Twitter,LinkedIn, &Instagram

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Moving Past Conflation of Race and Genetics - Newswise

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The vast majority of genes have been tied to cancer, complicating research – STAT

Posted: October 28, 2021 at 1:55 am

Joo Pedro de Magalhes scours the human genome for clues that might help us understand why people age and what we might do to stop that. Without fail, each time hes done one of these studies, nearly every gene ends up having some kind of link to cancer.

Always, he said. You always have some cancer-related genes in there.

The University of Liverpool researcher started to wonder just how many human genes are associated with cancer, and set about doing an analysis of genetic papers on the online medical archive PubMed. Of the 17,371 human genes studied at one point or another in papers in the archive, the vast majority have some connection to cancer.

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I think for nearly 90% of genes for which there are publications, they mention cancer in at least one of those publications, de Magalhes said. That surprised me a bit. I think what it means is that people really study cancer more than anything else.

On the one hand, his findings published in a commentary Wednesday in Trends in Geneticsare a bit of an academic oddity. But on the other, de Magalhes believes the results might indicate a trend that is complicating sciences ability to tease out which genes are underpinning true drivers of cancer and which are just passengers.

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STAT spoke with de Magalhes about the trend and what it means for the future of genetic analyses in cancer. This interview has been lightly edited for length and clarity.

What were some of your first reactions to the analysis results?

I was surprised by how strong the effects are. Nearly 90% of genes are associated with cancer. Its like a tongue-in-cheek observation, you know? Like, hey, if you work on cancer, any gene is likely to be associated with cancer.

But there have also been people pointing out that when you analyze genetic networks, you need to control for the number of publications associated with any gene in order to gather therapeutic insights. So, if you do this type of analysis, youll have this bias that the vast majority of genes have already been associated with cancer.

Why does that make it more difficult to study cancer genetics?

The main challenge is that if youre trying to interpret results or trying to identify new drug targets in the context of cancer, you have too many genes associated with it. If every gene can be associated with cancer, then figuring out which cancer-related genes are driving different types of cancer and identifying the best biomarkers becomes challenging. It becomes a problem of how we prioritize and study the genetics of cancer.

Finding a simple association is enough to have a publication. Thats the problem. By and large, many associations with cancer are quite I dont know if weak is the right word. Theyre just correlations.

Funnily enough, I was talking about this work with a colleague and she said that something similar is happening for Covid now. A lot of people just finding associations because theres such a huge research effort on Covid-19.

How can scientists avoid some of the pitfalls you describe and improve the study of genetics then?

It means you have to be careful. Unless you have direct genetic evidence, you have to be careful of cancer associations, and I dont think most people do that. I would say Im guilty of that as well. Also, if you want to associate a gene with cancer, if you study it hard enough then you probably will. A lot of the associations can be spurious, I think, but people can take the opportunity to say, Hey, I found this gene. Its associated with cancer. We need money to study it.

That kind of sounds like a bad thing, but is it so bad? If everyone can wave this big flag and say, Hey, my gene is also associated with cancer, and it might be important, maybe that would help more people get funded to do basic science on random genes. Then who knows, maybe you actually do find something really important?

Thats a good question. I dont know! In an ideal world, wed have a lot more investment in research, and wed be able to study all sorts of associations. I guess my take is that funds are limited, so we have to prioritize the funding allocation in some way because you cannot study every gene, right? Some are more important than others.

So, how do we pick the right genes to study?

Its a gray area. Causal associations would be best. When theres mutations in patients that are predisposed to cancer, that would be evidence of a causal role not just some association. One thing weve done is look at the number of publications associating a particular gene with longevity, but you can do the same with cancer. Theres a bit of a subjective element here, too, though.

Do you think that the vast majority of genes have been linked to cancer reveals something about cancer? Like its reinforcing this idea that our genetic machinery gets old, makes mistakes, and then its cancer?

Yes, thats right. If you look at genome instability, it increases with age. You can see it has more predispositions and the number of mutations increases with age in human tissues as well. So, I see this as a factor predisposing you to cancer development.

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The vast majority of genes have been tied to cancer, complicating research - STAT

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The Genetics Behind Bees’ Black and Yellow Butts – Gizmodo

Posted: October 28, 2021 at 1:55 am

If youre close enough to a bumblebee to see the order of its stripes, youre probably too close to it. But lucky for you, a team of geneticists recently did a more highfalutin version of that task, analyzing several species of bee to suss out what causes different species of the insect to get different patterns on their abdomens.

Previously, a specific developmental gene (Hox gene Abd-B) had been identified as somehow responsible for color variation in the animals rear ends. But beyond how that gene actually changed the colors, the bees were a black box. With the recent research, the team was able to pin down more of the exact genes involved in the process of pigmentation in the bees. Their research was published earlier this year in Genome Biology and Evolution.

Understanding these genes, we now have the potential to look at so many different bee species and how theyve diversified, said Heather Hines, an entomologist and geneticist at Penn State University and a co-author of the recent paper, in a university press release. So, its not a case that once we are finished here that were done. Given the diversity in these bees, theres just so much more that can be done with the discovery. This is just really the first step.

Many insects sport black-and-yellow backsides; some of them even develop the pattern to convince other species that theyre a more dangerous animal with the same markings, like a wasp. Sometimes two well-armed animals develop similar markings. Whatever the case for the copy-catting, these pretenders of nature are called mimics.

Theres some mimicry thats local to the bumblebee community, and thats what the recent team was looking at: Whos copying who among the 260-odd species that display about 400 different patterns on bees abdomensliterally, their rear ends. (There are many thousands of bee species, but not as many bumblebee species.) They studied one species in particular: Bombus melanopygus, the black-tailed or orange-rumped bumblebee.

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To conduct the genetic analysis in a bee not commonly used in research, the team had to lean on the more well-known and utilized genomes of other animal species. Luckily, though, they werent scanning the entire length of genetic codes manually.

The use of high-performance computation power has made this type of research more manageable and reproducible, said lead author Sarthok Rahman, a biologist now at the University of Alabama, in the same release. Because its a non-model organism, we also have to use other genomic sources from Drosophila and mice, for example, to search the genes and assign the identity.

The team found that farther along the genetic code from previously identified Hox gene (a Hox gene being a type of developmental gene that regulates structures on animals bodies), a bunch of genes are responsible for different ratios of eumelanin and pheomelanin in the bees, the former which governs black pigmentation and the latter which handles red colors.

This really adds to non-model, evolutionary genetic research, which is a growing field and the field is also expanding to be more comparative, said Hines. As we move forward, researchers will be looking at how genes and gene pathways have evolved across a broader diversity of species.

Were not done with the bees. Hardly. They offer new insights into the coloration of the insect world, but the genetic code (even in bees) is not the most reader-friendly document. Lets just hope we can understand the animals coloration faster than we kill them off.

More: Yellow Dog Coats Came From an Ancient Canid That Split From Wolves Millions of Years Ago

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The Genetics Behind Bees' Black and Yellow Butts - Gizmodo

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